Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000425`

染色体: Chr08 坐标: 3023808-3033733 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000425`
名称	SmilChr08G000425
描述	V-type proton ATPase subunit a1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3023808 - 3033733 / `-`

ID 对照

NCBI Gene ID	`LOC131000014`
GeneID	`131000014`
locus_tag	`-`
NCBI Name	`LOC131000014`
原始查询	`LOC131000014`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	V-type proton ATPase subunit a1-like
产物	V-type proton ATPase subunit a1-like
Arabidopsis	`AT2G28520` (VHA-A1) vacuolar proton ATPase A1 [Source:NCBI gene (formerly Entrezgene);Acc:817400] identity=77.5; qcov=0.985; evalue=0; confidence=high
Rice	`Os01g0834200` (P0460C04.33-1) - identity=74.7; qcov=0.994; evalue=0; confidence=high
GO	GO:0000220 (vacuolar proton-transporting V-type ATPase, V0 domain); GO:0007035 (vacuolar acidification); GO:0016471 (vacuolar proton-transporting V-type ATPase complex); GO:0046961 (proton-transporting ATPase activity, rotational mechanism); GO:0051117 (ATPase binding); GO:1902600 (proton transmembrane transport)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01496 (V_ATPase_I)
InterPro	-
eggNOG	-
NR	GeneID:131000014

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057781724.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057781724.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.40000	`XP_057781723.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057781724.1`
5	Endoplasmic reticulum	内质网	0.20000	`XP_057781723.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3024166`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C15
`Chr8:3024166`	`T`	`TA`	1bp_insertion	CDS_variant	1	C15
`Chr8:3024191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:3024197`	`A`	`AAT`	2bp_insertion	frameshift_variant	1	C15
`Chr8:3024197`	`A`	`AAT`	2bp_insertion	CDS_variant	1	C15
`Chr8:3024211`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:3024230`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C15
`Chr8:3024230`	`G`	`GC`	1bp_insertion	CDS_variant	1	C15
`Chr8:3024231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:3024275`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr8:3024302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,C61
`Chr8:3024741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B101,B33,B60,B79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781723.1

820 aa

410

820

V_ATPase_I

PF01496 V_ATPase_I 36-812 aa

XP_057781724.1

676 aa

338

676

V_ATPase_I

PF01496 V_ATPase_I 21-668 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781723.1`	Pfam	`PF01496`	V_ATPase_I	Family	36	812	1.2e-295	983.4	V-type ATPase 116kDa subunit family
`XP_057781724.1`	Pfam	`PF01496`	V_ATPase_I	Family	21	668	3e-262	873.0	V-type ATPase 116kDa subunit family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925740.1
CTTCAAAAAAGTGATGCAGCAGCGTAGCGTGAACAGTATTTCAATCTTCCAATTTACTCATCTTCACGACTTCACCCCAACCCATTAAAACGGAAAACGACACCAGAAATTCTCCCATGGCAGTTGCCTTCTCCACCACCATCTCCACTGCCATCAAATTCACTTCCAACCTATACATACACATATACGTATAACTCAAATCTCCCGCCTCGCCAACTTTCTCGCTCACACACACTCACACGCAACCGAGCCTGTCTCTC...

XM_057925741.1
TGGACTTGCTGAGCATGAGCACGAGTTAATTGAAATGAATCATAACAGTGAGAAGCTGCAGCAAACATATAATGAGTTGCTTGAGTTCAAGATGGTCCTACAGAAGGTGACTTTCTTATGCCCGATGGGAATCATTCCGCAGCACAAGAGACAGAATTAGATGAAAATGTTCATATAAACAATGGTTATGCCGATTCAGCATCACTGCTGGAACAGGAGATGCAACCTGGAATATCAGATCAGTCTGGTGTGAAGTTTGT...

CDS

2 records

下载 CDS FASTA

LOC131000014
ATGGAGTACATCGACAGATTGCCGAGCATGGATCTGATGCGCTCCGAGAAGATGATGCTGGCTCAGCTGATTATACCCGTCGAGTCGGCTCACCGCGCCGTCTCCTATCTCGGCCAACTAGGTCTCCTCCAATTCCGCGATTTAAATGATGATAAAAGCCCTTTCCAGAGAACGTTTGTTAACCAGGTTAAAAGATGTGCTGAGATGTCCAGAAAGTTACGTTTTTTCAAAGATCAGATACATAAAGCTGGTCTAGGGCT...

LOC131000014
ATGCCCGATGGGAATCATTCCGCAGCACAAGAGACAGAATTAGATGAAAATGTTCATATAAACAATGGTTATGCCGATTCAGCATCACTGCTGGAACAGGAGATGCAACCTGGAATATCAGATCAGTCTGGTGTGAAGTTTGTAAGTGGTGTAATTTGTAAATCTAAAGCATTGAGATTCGAAAGGATGTTGTTTCGTACAACCAGGGGAAATATGCTTTTCAATCAGGCACCAGCGGATGACCCAATTGTGGATCCTGC...

Protein

2 records

下载 Protein FASTA

XP_057781723.1
MEYIDRLPSMDLMRSEKMMLAQLIIPVESAHRAVSYLGQLGLLQFRDLNDDKSPFQRTFVNQVKRCAEMSRKLRFFKDQIHKAGLGLSPHPASETDIELEELEAGLAEHEHELIEMNHNSEKLQQTYNELLEFKMVLQKAGDFLMPDGNHSAAQETELDENVHINNGYADSASLLEQEMQPGISDQSGVKFVSGVICKSKALRFERMLFRTTRGNMLFNQAPADDPIVDPASNEMVENTVFMVFFSGEQARKKIHKICEA...

XP_057781724.1
MPDGNHSAAQETELDENVHINNGYADSASLLEQEMQPGISDQSGVKFVSGVICKSKALRFERMLFRTTRGNMLFNQAPADDPIVDPASNEMVENTVFMVFFSGEQARKKIHKICEAFGANCYPVPEDSIKRRQITRDVLSRLSELETTLEAGLRHRDAALTSIGFQLTKWMNMVRREKAIYDTLNMLNFDVTKKCLVGEGWCPIFAKTMIQDALQRATFDSNSQVGIIFHVMDSIESPPTFFRTNHFTNAYQEIVDAYGV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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