Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000429`

染色体: Chr08 坐标: 3077484-3083077 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000429`
名称	SmilChr08G000429
描述	disease resistance protein RGA2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3077484 - 3083077 / `+`

ID 对照

NCBI Gene ID	`LOC131000019`
GeneID	`131000019`
locus_tag	`-`
NCBI Name	`LOC131000019`
原始查询	`LOC131000019`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	disease resistance protein RGA2-like
产物	disease resistance protein RGA2-like
Arabidopsis	`AT3G14470` (AT3G14470) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.6; qcov=0.884; evalue=4.53e-116; confidence=low
Rice	`Os05g0492200` (YR1) - identity=31.5; qcov=1.04; evalue=3.26e-136; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:131000019

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057781730.1`
2	Cytosol	细胞质基质	0.20000	`XP_057781730.1`
3	Nucleus	细胞核	0.00000	`XP_057781730.1`
4	Chromosome	染色体	0.00000	`XP_057781730.1`
5	Centromere	着丝粒	0.00000	`XP_057781730.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3077607`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B114,B31
`Chr8:3077635`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B69,C35
`Chr8:3077642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B113,B61,C49
`Chr8:3077657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B133,C18,C21,C63,C79
`Chr8:3077658`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B12,B93,C83
`Chr8:3077672`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B111,B114,B18,B31,C28
`Chr8:3077681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr8:3077684`	`C`	`CG`	1bp_insertion	frameshift_variant	35	A10,A14,A9,B10,B102,B122,B128,B136,B18,B19,B27,B51,B54,B58,B64,B65,B66,B67,B70,B76,B84,B90,B92,B97,C4,C44,C47,C5,C55,C56,C64,C66,C72,C73,C81
`Chr8:3077685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B104
`Chr8:3077689`	`G`	`GC`	1bp_insertion	frameshift_variant	154	A10,A11,A13,A15,A16,A18,A19,A21,A22,A4,A5,A6,A7,A9,B10,B100,B101,B102,B103,B104,B106,B107,B108,B109,B112,B113,B115,B117,B119,B120,B122,B123,B124,B125,B126,B129,B13,B130,B135,B14,B140,B15,B16,B17,B18,B19,B2,B20,B22,B23,B24,B27,B29,B30,B32,B34,B35,B37,B38,B39,B4,B40,B42,B43,B47,B48,B50,B51,B52,B55,B57,B58,B6,B60,B61,B65,B66,B67,B69,B71,B72,B74,B76,B77,B81,B82,B83,B86,B89,B9,B90,B91,B95,B96,B97,B98,C1,C10,C12,C13,C14,C15,C16,C19,C2,C20,C21,C22,C23,C26,C28,C31,C32,C33,C34,C35,C36,C37,C38,C40,C43,C44,C45,C46,C47,C51,C52,C54,C56,C58,C60,C61,C62,C68,C7,C70,C73,C74,C76,C77,C78,C79,C80,C82,C85,C86,C87,C9,D10,D11,D2,D4,D6,D8
`Chr8:3077695`	`CT`	`C`	1bp_deletion	frameshift_variant	2	B122,C80
`Chr8:3077695`	`CT`	`C`	1bp_deletion	CDS_variant	2	B122,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781730.1

1177 aa

588

1177

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 10-95 aa PF00931 NB-ARC 194-361 aa PF13401 AAA_22 196-284 aa PF23559 WHD_DRP 444-515 aa PF23598 LRR_14 565-841 aa PF25019 LRR_R13L1-DRL21 682-809 aa

XP_057781731.1

1177 aa

588

1177

Rx_N

NB-ARC

AAA_22

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF18052 Rx_N 10-95 aa PF00931 NB-ARC 194-361 aa PF13401 AAA_22 196-284 aa PF23559 WHD_DRP 444-515 aa PF23598 LRR_14 565-841 aa PF25019 LRR_R13L1-DRL21 682-809 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781730.1`	Pfam	`PF18052`	Rx_N	Domain	10	95	9.5e-20	71.2	Rx N-terminal domain
`XP_057781730.1`	Pfam	`PF00931`	NB-ARC	Domain	194	361	5.3e-31	108.2	NB-ARC domain
`XP_057781730.1`	Pfam	`PF13401`	AAA_22	Domain	196	284	3.6e-07	31.3	AAA domain
`XP_057781730.1`	Pfam	`PF23559`	WHD_DRP	Domain	444	515	1.2e-23	83.7	Disease resistance protein Winged helix domain
`XP_057781730.1`	Pfam	`PF23598`	LRR_14	Repeat	565	841	5.6e-41	141.2	Leucine-rich repeat region
`XP_057781730.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	682	809	2.4e-46	157.5	R13L1/DRL21 LRRs
`XP_057781731.1`	Pfam	`PF18052`	Rx_N	Domain	10	95	9.5e-20	71.2	Rx N-terminal domain
`XP_057781731.1`	Pfam	`PF00931`	NB-ARC	Domain	194	361	5.3e-31	108.2	NB-ARC domain
`XP_057781731.1`	Pfam	`PF13401`	AAA_22	Domain	196	284	3.6e-07	31.3	AAA domain
`XP_057781731.1`	Pfam	`PF23559`	WHD_DRP	Domain	444	515	1.2e-23	83.7	Disease resistance protein Winged helix domain
`XP_057781731.1`	Pfam	`PF23598`	LRR_14	Repeat	565	841	5.6e-41	141.2	Leucine-rich repeat region
`XP_057781731.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	682	809	2.4e-46	157.5	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925747.1
TCTCTCTCACACTCACACAGAGCAGAAACAATGGAAGGAGAAGCTGTTGCAGCCATCCTCAAAGTTCTGGTTCAAAACCTCATCGATCATTCCAAGAATGAATTCTCACTAATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAACTGGAAGTCTCGACACCATCCAGAAATTCCTCAACGACGCGGAGGCGCGCACCATCCCCGGGGAGGCTGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCCATGCTGA...

XM_057925748.1
TCTCTCTCACACTCACACAGAGCAGAAACAATGGAAGGAGAAGCTGTTGCAGCCATCCTCAAAGTTCTGGTTCAAAACCTCATCGATCATTCCAAGAATGAATTCTCACTAATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAACTGGAAGTCTCGACACCATCCAGAAATTCCTCAACGACGCGGAGGCGCGCACCATCCCCGGGGAGGCTGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCCATGCTGA...

CDS

2 records

下载 CDS FASTA

LOC131000019
ATGGAAGGAGAAGCTGTTGCAGCCATCCTCAAAGTTCTGGTTCAAAACCTCATCGATCATTCCAAGAATGAATTCTCACTAATCCGAGGTCTCGACAAAGAAGCAGCAAAGCTAACTGGAAGTCTCGACACCATCCAGAAATTCCTCAACGACGCGGAGGCGCGCACCATCCCCGGGGAGGCTGTCAAGAGCTGGCTGAAGAAGCTTGAAGACGTGGCGTTCCATGCTGACAACGTTTTGGATGAACTCAACTATCATCT...

Protein

2 records

下载 Protein FASTA

XP_057781730.1
MEGEAVAAILKVLVQNLIDHSKNEFSLIRGLDKEAAKLTGSLDTIQKFLNDAEARTIPGEAVKSWLKKLEDVAFHADNVLDELNYHLLSKQIKRTKPMKEKVLSCFSSSFNSIARPRNMAVKIQEINESLDSLHKEGAGLGLNERVAADVPTLLNAAIFETDSFTLDPIFIGRDDVASEIAEMLTTNSITPDERTVSIISIVGMGGLGKTTLTRKVFNRLKDETRFGSHIWLHVSPNFDPIILFKKILNELTSDKAENTS...

XP_057781731.1
MEGEAVAAILKVLVQNLIDHSKNEFSLIRGLDKEAAKLTGSLDTIQKFLNDAEARTIPGEAVKSWLKKLEDVAFHADNVLDELNYHLLSKQIKRTKPMKEKVLSCFSSSFNSIARPRNMAVKIQEINESLDSLHKEGAGLGLNERVAADVPTLLNAAIFETDSFTLDPIFIGRDDVASEIAEMLTTNSITPDERTVSIISIVGMGGLGKTTLTRKVFNRLKDETRFGSHIWLHVSPNFDPIILFKKILNELTSDKAENTS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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