当前解析结果
SmilChr08G000428| 统一新 Gene ID | SmilChr08G000428 |
|---|---|
| 名称 | SmilChr08G000428 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3070160 - 3075660 / + |
| NCBI Gene ID | LOC131000020 |
|---|---|
| GeneID | 131000020 |
| locus_tag | - |
| NCBI Name | LOC131000020 |
| 原始查询 | LOC131000020 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=30.9; qcov=0.862; evalue=2.42e-112; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=32.7; qcov=1.01; evalue=1.43e-145; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13401 (AAA_22); PF18052 (Rx_N); PF23247 (LRR_RPS2); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057781732.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057781732.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781732.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781732.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781732.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3070384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C48 |
Chr8:3070397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C49 |
Chr8:3070407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B68,C49 |
Chr8:3070438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B38,C24 |
Chr8:3070453 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
Chr8:3070462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B20,C18,C63 |
Chr8:3070468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr8:3070534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr8:3070609 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr8:3070645 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:3070708 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B48,C56,C79 |
Chr8:3070709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C24 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781732.1PF18052
Rx_N 8-94 aa
PF00931
NB-ARC 193-347 aa
PF13401
AAA_22 196-283 aa
PF23559
WHD_DRP 430-501 aa
PF23598
LRR_14 549-820 aa
PF25019
LRR_R13L1-DRL21 660-787 aa
PF23247
LRR_RPS2 729-871 aa
PF25019
LRR_R13L1-DRL21 1040-1099 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781732.1 |
Pfam | PF18052 |
Rx_N | Domain | 8 | 94 | 8.4e-22 | 77.8 | Rx N-terminal domain |
XP_057781732.1 |
Pfam | PF00931 |
NB-ARC | Domain | 193 | 347 | 1.4e-35 | 123.1 | NB-ARC domain |
XP_057781732.1 |
Pfam | PF13401 |
AAA_22 | Domain | 196 | 283 | 3e-07 | 31.5 | AAA domain |
XP_057781732.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 501 | 5e-24 | 84.8 | Disease resistance protein Winged helix domain |
XP_057781732.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 549 | 820 | 1.6e-38 | 133.1 | Leucine-rich repeat region |
XP_057781732.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 660 | 787 | 2.3e-48 | 164.0 | R13L1/DRL21 LRRs |
XP_057781732.1 |
Pfam | PF23247 |
LRR_RPS2 | Repeat | 729 | 871 | 4.4e-15 | 56.7 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
XP_057781732.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 1040 | 1099 | 2.3e-48 | 164.0 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。