当前解析结果
SmilChr01G004186| 统一新 Gene ID | SmilChr01G004186 |
|---|---|
| 名称 | SmilChr01G004186 |
| 描述 | receptor-like serine/threonine-protein kinase ALE2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60290142 - 60296371 / + |
| NCBI Gene ID | LOC131000023 |
|---|---|
| GeneID | 131000023 |
| locus_tag | - |
| NCBI Name | LOC131000023 |
| 原始查询 | LOC131000023 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like serine/threonine-protein kinase ALE2 |
| 产物 | receptor-like serine/threonine-protein kinase ALE2 |
| Arabidopsis | AT2G20300 (ALE2)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816549] identity=65; qcov=0.867; evalue=0; confidence=high |
| Rice | Os02g0815900 (P0643F09.9-2)- identity=52.7; qcov=0.899; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF23180 (ALE2_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000023 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057781742.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057781742.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057781742.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057781742.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057781742.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60292006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B133,B29,B4,C5 |
Chr1:60292011 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr1:60292338 |
A |
AG |
1bp_insertion | frameshift_variant | 6 | B131,B4,B91,C36,C57,D6 |
Chr1:60293041 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B112,B127,B36,B79,C81 |
Chr1:60293041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B127,B36,B79,C81 |
Chr1:60293069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B30,D3 |
Chr1:60293153 |
AGG |
A |
2bp_deletion | frameshift_variant | 5 | A6,B127,B41,C77,C85 |
Chr1:60293153 |
AGG |
A |
2bp_deletion | CDS_variant | 5 | A6,B127,B41,C77,C85 |
Chr1:60293202 |
C |
CG |
1bp_insertion | frameshift_variant | 4 | A6,B127,B41,C77 |
Chr1:60293202 |
C |
CG |
1bp_insertion | CDS_variant | 4 | A6,B127,B41,C77 |
Chr1:60293220 |
GC |
* |
1bp_deletion | CDS_variant | 4 | B122,B27,B70,C24 |
Chr1:60293224 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | B127,B41,C77,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781742.1PF23180
ALE2_N 120-235 aa
PF00069
Pkinase 367-581 aa
PF07714
PK_Tyr_Ser-Thr 368-636 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781742.1 |
Pfam | PF23180 |
ALE2_N | Domain | 120 | 235 | 3.1e-48 | 163.5 | Receptor-like PK ALE2 N-terminal domain |
XP_057781742.1 |
Pfam | PF00069 |
Pkinase | Domain | 367 | 581 | 2.4e-45 | 155.7 | Protein kinase domain |
XP_057781742.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 368 | 636 | 7.7e-48 | 163.8 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。