当前解析结果
SmilChr08G000444| 统一新 Gene ID | SmilChr08G000444 |
|---|---|
| 名称 | SmilChr08G000444 |
| 描述 | ATP synthase subunit d, mitochondrial-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3168558 - 3171980 / + |
| NCBI Gene ID | LOC131000032 |
|---|---|
| GeneID | 131000032 |
| locus_tag | - |
| NCBI Name | LOC131000032 |
| 原始查询 | LOC131000032 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ATP synthase subunit d, mitochondrial-like |
| 产物 | ATP synthase subunit d%2C mitochondrial-like |
| Arabidopsis | AT3G52300 (ATPQ)ATP synthase D chain [Source:NCBI gene (formerly Entrezgene);Acc:824395] identity=84.5; qcov=0.721; evalue=1.42e-105; confidence=high |
| Rice | Os08g0478200 (RMtATPd2)- identity=76.3; qcov=0.725; evalue=3.98e-96; confidence=high |
| GO | GO:0000274 (GO:0000274); GO:0000276 (GO:0000276); GO:0015078 (proton transmembrane transporter activity); GO:0015986 (proton motive force-driven ATP synthesis) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05873 (Mt_ATP-synt_D) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000032 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057781750.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057781750.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.20000 | XP_057781750.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057781750.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057781750.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3168627 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B47,D7 |
Chr8:3168643 |
AAT |
A |
2bp_deletion | frameshift_variant | 48 | A16,A23,A25,B105,B111,B118,B125,B134,B138,B139,B17,B2,B21,B36,B38,B39,B44,B45,B5,B50,B54,B61,B66,B68,B71,B77,B78,B83,B86,B9,B97,B99,C1,C2,C25,C27,C29,C37,C46,C50,C59,C6,C60,C62,C70,C78,C79,C82 |
Chr8:3168669 |
G |
GC |
1bp_insertion | frameshift_variant | 101 | A11,A16,A24,A25,A3,A5,A6,B1,B100,B103,B110,B115,B118,B12,B122,B124,B125,B132,B135,B136,B137,B138,B139,B14,B17,B2,B20,B21,B24,B25,B26,B27,B31,B36,B37,B41,B45,B46,B49,B5,B52,B55,B57,B58,B6,B60,B62,B63,B66,B68,B69,B7,B70,B72,B78,B8,B83,B85,B89,B9,B97,B98,B99,C1,C17,C2,C21,C23,C25,C27,C28,C3,C32,C36,C37,C4,C42,C45,C46,C47,C49,C50,C51,C59,C6,C60,C64,C68,C74,C75,C76,C77,C78,C79,C86,C87,D10,D11,D3,D5,D7 |
Chr8:3168692 |
A |
AT |
1bp_insertion | frameshift_variant | 43 | B112,B114,B12,B120,B129,B136,B2,B26,B29,B31,B32,B33,B4,B41,B47,B5,B58,B64,B69,B77,B78,B80,B85,B86,B94,C14,C17,C23,C24,C25,C27,C33,C36,C4,C45,C55,C56,C6,C64,C66,C86,D3,D5 |
Chr8:3168738 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B110,B24,B85 |
Chr8:3168738 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B110,B24,B85 |
Chr8:3168739 |
TC |
* |
1bp_deletion | CDS_variant | 3 | B110,B24,B85 |
Chr8:3168777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr8:3168802 |
C |
CAA |
2bp_insertion | frameshift_variant | 11 | B102,B114,B123,B127,B82,B84,C48,C6,C65,C67,C71 |
Chr8:3168805 |
G |
GAC |
2bp_insertion | frameshift_variant | 2 | B37,C74 |
Chr8:3168805 |
G |
GAC |
2bp_insertion | CDS_variant | 2 | B37,C74 |
Chr8:3168807 |
GGT |
G |
2bp_deletion | frameshift_variant | 7 | A13,B16,B37,B51,B53,B92,C74 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781750.1PF05873
Mt_ATP-synt_D 81-231 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781750.1 |
Pfam | PF05873 |
Mt_ATP-synt_D | Family | 81 | 231 | 6.6e-18 | 65.7 | ATP synthase D chain, mitochondrial (ATP5H) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。