Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000458`

染色体: Chr08 坐标: 3285619-3288749 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000458`
名称	SmilChr08G000458
描述	DNA polymerase II subunit B3-1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3285619 - 3288749 / `-`

ID 对照

NCBI Gene ID	`LOC131000048`
GeneID	`131000048`
locus_tag	`-`
NCBI Name	`LOC131000048`
原始查询	`LOC131000048`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA polymerase II subunit B3-1
产物	DNA polymerase II subunit B3-1
Arabidopsis	`AT1G07980` (NF-YC10) nuclear factor Y, subunit C10 [Source:NCBI gene (formerly Entrezgene);Acc:837313] identity=41.5; qcov=0.508; evalue=7.36e-23; confidence=medium
Rice	`Os03g0852300` (OsDPB3-2) - identity=44.8; qcov=0.36; evalue=5.52e-22; confidence=low
GO	GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone); PF00808 (CBFD_NFYB_HMF)
InterPro	-
eggNOG	-
NR	GeneID:131000048

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781782.1`
2	Chromosome	染色体	0.60000	`XP_057781784.1`
3	Centromere	着丝粒	0.00000	`XP_057781782.1`
4	Chromatin	染色质	0.00000	`XP_057781782.1`
5	Telomere	端粒	0.00000	`XP_057781782.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3285907`	`AT`	`A`	1bp_deletion	frameshift_variant	10	B130,B16,B30,B37,B4,B58,B91,C36,C38,C52
`Chr8:3285917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B5,C57,C82
`Chr8:3285978`	`A`	`AC`	1bp_insertion	stop_gained,frameshift_variant	1	B25
`Chr8:3285978`	`A`	`AC`	1bp_insertion	CDS_variant	1	B25
`Chr8:3285986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C18,C60,C73,D6
`Chr8:3285993`	`CG`	`C`	1bp_deletion	frameshift_variant	5	B108,B46,B56,B96,D7
`Chr8:3285993`	`CG`	`C`	1bp_deletion	CDS_variant	5	B108,B46,B56,B96,D7
`Chr8:3285996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B108,B46,B56,B96,D7
`Chr8:3285998`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:3286005`	`T`	`TA`	1bp_insertion	frameshift_variant	4	B24,B48,B72,C56
`Chr8:3286005`	`T`	`TA`	1bp_insertion	CDS_variant	4	B24,B48,B72,C56
`Chr8:3286050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B105

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781782.1

293 aa

146

293

Histone

CBFD_NFYB_HMF

PF00125 Histone 145-211 aa PF00808 CBFD_NFYB_HMF 148-210 aa

XP_057781783.1

263 aa

132

263

Histone

CBFD_NFYB_HMF

PF00125 Histone 144-211 aa PF00808 CBFD_NFYB_HMF 148-211 aa

XP_057781784.1

242 aa

121

242

Histone

CBFD_NFYB_HMF

PF00125 Histone 145-211 aa PF00808 CBFD_NFYB_HMF 148-211 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781782.1`	Pfam	`PF00125`	Histone	Domain	145	211	3.7e-06	27.9	Core histone H2A/H2B/H3/H4 domain
`XP_057781782.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	148	210	2.8e-11	44.3	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
`XP_057781783.1`	Pfam	`PF00125`	Histone	Domain	144	211	9.2e-06	26.7	Core histone H2A/H2B/H3/H4 domain
`XP_057781783.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	148	211	1e-11	45.6	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
`XP_057781784.1`	Pfam	`PF00125`	Histone	Domain	145	211	5.9e-06	27.3	Core histone H2A/H2B/H3/H4 domain
`XP_057781784.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	148	211	7.7e-12	46.0	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057925801.1
ATCCAAACACTTCATACTGCAACGGCTTGATTTCTGAAACAATGGCGAGAAAGCAATTGCCTCCTGAGAGAAACAGAAACCCCAACAACAATTCCAAGAGCCCTGCGAAAACCAAAGCCAAAACGAAGAATTCTCCCAAAACCAGCGCCAAGAGCAGCAACAGAAATCGAAGCAGAATCACGGAAACCGCCAATGGCGATGCTTCCAGCGAGGATACGGAAGTAACCGTCGTGCCTTCGTCGAGCGTGGAATCGGAAAAC...

XM_057925800.1
ATCCAAACACTTCATACTGCAACGGCTTGATTTCTGAAACAATGGCGAGAAAGCAATTGCCTCCTGAGAGAAACAGAAACCCCAACAACAATTCCAAGAGCCCTGCGAAAACCAAAGCCAAAACGAAGAATTCTCCCAAAACCAGCGCCAAGAGCAGCAACAGAAATCGAAGCAGAATCACGGAAACCGCCAATGGCGATGCTTCCAGCGAGGATACGGAAGTAACCGTCGTGCCTTCGTCGAGCGTGGAATCGGAAAAC...

CDS

3 records

下载 CDS FASTA

LOC131000048
ATGGCGAGAAAGCAATTGCCTCCTGAGAGAAACAGAAACCCCAACAACAATTCCAAGAGCCCTGCGAAAACCAAAGCCAAAACGAAGAATTCTCCCAAAACCAGCGCCAAGAGCAGCAACAGAAATCGAAGCAGAATCACGGAAACCGCCAATGGCGATGCTTCCAGCGAGGATACGGAAGTAACCGTCGTGCCTTCGTCGAGCGTGGAATCGGAAAACGACGACGTCACGGGATCCAGTGAGGGGGAGGACGACGGAGT...

Protein

3 records

下载 Protein FASTA

XP_057781782.1
MARKQLPPERNRNPNNNSKSPAKTKAKTKNSPKTSAKSSNRNRSRITETANGDASSEDTEVTVVPSSSVESENDDVTGSSEGEDDGVERRSSSEEEEEEEEEEEEEQKPKSVNRRGKKVSAKSKGKKRSRKGEDELEAEEKSVNALYTFPKSRISRMVRSENPDCKISQEALFVIDRASEKFLQVFCKEAYACAFLEKKKRIAYNHLCTAASFYYFVPLILKCMLHTLYILLMCLLCIYMHFENAKNKHACCCLLCLFFF...

XP_057781783.1
MARKQLPPERNRNPNNNSKSPAKTKAKTKNSPKTSAKSSNRNRSRITETANGDASSEDTEVTVVPSSSVESENDDVTGSSEGEDDGVERRSSSEEEEEEEEEEEEEQKPKSVNRRGKKVSAKSKGKKRSRKGEDELEAEEKSVNALYTFPKSRISRMVRSENPDCKISQEALFVIDRASEKFLQVFCKEAYACAFLEKKKRIAYNHLSSVVSKRKRFQFVSGTFLPLSTTNLSSFVCLYPTLSAHSFLRVRSHSRFYALR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器