当前解析结果
SmilChr08G000474| 统一新 Gene ID | SmilChr08G000474 |
|---|---|
| 名称 | SmilChr08G000474 |
| 描述 | homeobox-leucine zipper protein REVOLUTA-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3389944 - 3396333 / + |
| NCBI Gene ID | LOC131000063 |
|---|---|
| GeneID | 131000063 |
| locus_tag | - |
| NCBI Name | LOC131000063 |
| 原始查询 | LOC131000063 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | homeobox-leucine zipper protein REVOLUTA-like |
| 产物 | homeobox-leucine zipper protein REVOLUTA-like |
| Arabidopsis | AT5G60690 (REV)Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836190] identity=80.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os10g0480200 (Oshox9)- identity=71.3; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF01852 (START); PF08670 (MEKHLA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000063 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781805.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057781805.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057781805.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781805.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781805.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3391459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C48,C8 |
Chr8:3392016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr8:3392227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,B8 |
Chr8:3392353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,B36,B4,B78,C3 |
Chr8:3392560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr8:3392587 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B38,B39 |
Chr8:3392755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B78,B99 |
Chr8:3393039 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B133,B90,B92,C55 |
Chr8:3393404 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B61,B94,C87 |
Chr8:3393629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A22,B80,C62 |
Chr8:3394202 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B40 |
Chr8:3394215 |
TTG |
T |
2bp_deletion | frameshift_variant | 1 | B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781805.1PF00046
Homeodomain 26-84 aa
PF01852
START 165-371 aa
PF08670
MEKHLA 697-841 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781805.1 |
Pfam | PF00046 |
Homeodomain | Domain | 26 | 84 | 1.5e-15 | 57.5 | Homeodomain |
XP_057781805.1 |
Pfam | PF01852 |
START | Domain | 165 | 371 | 7e-45 | 153.7 | START domain |
XP_057781805.1 |
Pfam | PF08670 |
MEKHLA | Domain | 697 | 841 | 1.3e-44 | 152.3 | MEKHLA domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。