Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004173`

染色体: Chr01 坐标: 60203760-60208887 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004173`
名称	SmilChr01G004173
描述	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60203760 - 60208887 / `+`

ID 对照

NCBI Gene ID	`LOC131000080`
GeneID	`131000080`
locus_tag	`-`
NCBI Name	`LOC131000080`
原始查询	`LOC131000080`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
产物	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9%2C mitochondrial
Arabidopsis	`AT2G20360` (AT2G20360) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816555] identity=78.1; qcov=0.917; evalue=0; confidence=high
Rice	`Os02g0816800` (OsNDUFA9) - identity=76.3; qcov=0.92; evalue=0; confidence=high
GO	GO:0005739 (mitochondrion); GO:0044877 (protein-containing complex binding); GO:1901006 (GO:1901006)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF05368 (NmrA); PF13460 (NAD_binding_10)
InterPro	-
eggNOG	-
NR	GeneID:131000080

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781832.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057781832.1`
3	Mitochondrion inner membrane	线粒体内膜	1.00000	`XP_057781832.1`
4	Nucleus	细胞核	0.00000	`XP_057781832.1`
5	Chromosome	染色体	0.00000	`XP_057781832.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60204506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:60204929`	`AC`	`A`	1bp_deletion	frameshift_variant	8	B136,B46,B59,B94,C37,C44,C78,D5
`Chr1:60205991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B115,B35,C28
`Chr1:60205996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,C5
`Chr1:60206387`	`CA`	`C`	1bp_deletion	frameshift_variant	2	B127,B67
`Chr1:60206387`	`CA`	`C`	1bp_deletion	CDS_variant	2	B127,B67
`Chr1:60206607`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B122
`Chr1:60206607`	`AC`	`A`	1bp_deletion	CDS_variant	1	B122
`Chr1:60206803`	`T`	`TCC`	2bp_insertion	frameshift_variant	130	A10,A13,A16,A19,A22,A25,A4,A9,B10,B100,B102,B104,B105,B107,B109,B11,B110,B111,B112,B113,B119,B122,B124,B125,B126,B127,B128,B13,B130,B132,B133,B134,B136,B137,B140,B15,B16,B19,B2,B20,B22,B23,B25,B26,B28,B31,B32,B33,B35,B38,B4,B40,B42,B43,B44,B49,B56,B57,B59,B6,B60,B61,B63,B64,B69,B71,B74,B77,B80,B81,B84,B86,B87,B88,B89,B90,B91,B92,B94,B97,B99,C1,C16,C17,C19,C20,C21,C25,C26,C27,C28,C3,C31,C32,C33,C35,C38,C39,C4,C41,C43,C45,C50,C52,C53,C62,C64,C65,C68,C70,C71,C73,C75,C76,C78,C83,C84,C85,C86,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:60206804`	`GGT`	`G`	2bp_deletion	frameshift_variant	129	A10,A13,A16,A19,A22,A25,A4,A9,B10,B100,B102,B104,B105,B107,B109,B11,B110,B111,B112,B113,B119,B122,B124,B125,B126,B127,B128,B13,B130,B132,B133,B134,B136,B137,B140,B15,B16,B19,B2,B20,B22,B23,B25,B26,B28,B31,B32,B33,B35,B38,B4,B40,B42,B43,B44,B49,B56,B57,B59,B6,B60,B61,B63,B64,B69,B71,B74,B77,B80,B81,B84,B86,B87,B88,B89,B90,B91,B92,B94,B97,B99,C1,C16,C17,C19,C21,C25,C26,C27,C28,C3,C31,C32,C33,C35,C38,C39,C4,C41,C43,C45,C50,C52,C53,C62,C64,C65,C68,C70,C71,C73,C75,C76,C78,C83,C84,C85,C86,C9,D1,D10,D2,D3,D4,D5,D6,D7,D8,D9
`Chr1:60207885`	`C`	`CT`	1bp_insertion	frameshift_variant	16	A23,A8,B118,B24,B25,B49,B56,B57,B60,B70,B78,C41,C6,C8,C87,D3
`Chr1:60207886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B70,B84,C41,C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781832.1

399 aa

200

399

Epimerase

NmrA

NAD_binding_10

PF01370 Epimerase 70-281 aa PF05368 NmrA 70-331 aa PF13460 NAD_binding_10 73-220 aa

XP_057781839.1

399 aa

200

399

Epimerase

NmrA

NAD_binding_10

PF01370 Epimerase 70-281 aa PF05368 NmrA 70-331 aa PF13460 NAD_binding_10 73-220 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781832.1`	Pfam	`PF01370`	Epimerase	Family	70	281	1.2e-12	48.5	NAD dependent epimerase/dehydratase family
`XP_057781832.1`	Pfam	`PF05368`	NmrA	Family	70	331	8e-11	42.8	NmrA-like family
`XP_057781832.1`	Pfam	`PF13460`	NAD_binding_10	Domain	73	220	1.7e-08	35.3	NAD(P)H-binding
`XP_057781839.1`	Pfam	`PF01370`	Epimerase	Family	70	281	1.2e-12	48.5	NAD dependent epimerase/dehydratase family
`XP_057781839.1`	Pfam	`PF05368`	NmrA	Family	70	331	8e-11	42.8	NmrA-like family
`XP_057781839.1`	Pfam	`PF13460`	NAD_binding_10	Domain	73	220	1.7e-08	35.3	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925849.1
TAGAGTAATAGTCGCGTTTACAACATGCGATTAGCTTCAAAGTTGGTATAGAATTCCAATCAACAATAGTGGAACTCCCATTTCCTCGCTCATCTCGAACCCCACCGTAGAAGTAAAGATGCAGTCCGTTTACCGGCGGTTGCGCCACCACCACTTCGACCAATCACCTGCACAAATTGCCTCTTACAAATCGATTATTCCTCTTTCCGATCGGTTTAATGGAGCAAACGATTCGAGGTGCGCTTCTACTCTTGCCACCA...

XM_057925856.1
TACAACATGCGATTAGCTTCAAAGTTGGTATAGAATTCCAATCAACAATAGTGGAACTCCCATTTCCTCGCTCATCTCGAACCCCACCGTAGAAGTAAAGATGCAGTCCGTTTACCGGCGGTTGCGCCACCACCACTTCGACCAATCACCTGCACAAATTGCCTCTTACAAATCGATTATTCCTCTTTCCGATCGGTTTAATGGAGCAAACGATTCGAGGTGCGCTTCTACTCTTGCCACCAAAGGCGTGGGGCATCTAG...

CDS

2 records

下载 CDS FASTA

LOC131000080
ATGCAGTCCGTTTACCGGCGGTTGCGCCACCACCACTTCGACCAATCACCTGCACAAATTGCCTCTTACAAATCGATTATTCCTCTTTCCGATCGGTTTAATGGAGCAAACGATTCGAGGTGCGCTTCTACTCTTGCCACCAAAGGCGTGGGGCATCTAGTTCGCAAGGGCACTGGTGGAAGATCATCTGTTAGTGGCATTGTCGCGACGGTCTTTGGGGCTACAGGATTTCTTGGGCGATATTTAGTGCAAAAGCTTGC...

Protein

2 records

下载 Protein FASTA

XP_057781832.1
MQSVYRRLRHHHFDQSPAQIASYKSIIPLSDRFNGANDSRCASTLATKGVGHLVRKGTGGRSSVSGIVATVFGATGFLGRYLVQKLAKMGSQVLVPFRGSEDSHRHLKLMGDLGQIVPMKYNPRDENSIKAVMAKANVVINLIGREYGTRNFSIEEVNHHMAEKLAVIAKEHGGIMRFIQVSCLGASPSSPSRMLRAKAAAEEAILRELPEVTVMKPAVMIGTEDRILNPWAHFAKKYSFLPLMGDGSTKIQPVYVVDVA...

XP_057781839.1
MQSVYRRLRHHHFDQSPAQIASYKSIIPLSDRFNGANDSRCASTLATKGVGHLVRKGTGGRSSVSGIVATVFGATGFLGRYLVQKLAKMGSQVLVPFRGSEDSHRHLKLMGDLGQIVPMKYNPRDENSIKAVMAKANVVINLIGREYGTRNFSIEEVNHHMAEKLAVIAKEHGGIMRFIQVSCLGASPSSPSRMLRAKAAAEEAILRELPEVTVMKPAVMIGTEDRILNPWAHFAKKYSFLPLMGDGSTKIQPVYVVDVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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