Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000492`

染色体: Chr08 坐标: 3553289-3555731 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000492`
名称	SmilChr08G000492
描述	uncharacterized SmilChr08G000492
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3553289 - 3555731 / `-`

ID 对照

NCBI Gene ID	`LOC131000084`
GeneID	`131000084`
locus_tag	`-`
NCBI Name	`LOC131000084`
原始查询	`LOC131000084`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:823640]; symbol=AT3G45050; hit=AT3G45050; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:823640]; symbol=AT3G45050; hit=AT3G45050; species=arabidopsis; confidence=high
Arabidopsis	`AT3G45050` (AT3G45050) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:823640] identity=59.1; qcov=0.82; evalue=8.53e-51; confidence=high
Rice	`Os06g0731300` - identity=63.4; qcov=0.441; evalue=8.97e-26; confidence=low
GO	-
KEGG	-
Pfam	PF25433 (DUF7895)
InterPro	-
eggNOG	-
NR	GeneID:131000084

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057781834.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057781834.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057781835.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057781835.1`
5	Nucleus	细胞核	0.00000	`XP_057781834.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3553579`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B62,C18,C24
`Chr8:3553825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C43,C8
`Chr8:3553865`	`T`	`TA`	1bp_insertion	frameshift_variant	4	A13,A14,C12,C27
`Chr8:3553865`	`T`	`TA`	1bp_insertion	CDS_variant	4	A13,A14,C12,C27
`Chr8:3554436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr8:3554639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:3555589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:3555634`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B4,C44
`Chr8:3555634`	`A`	`AT`	1bp_insertion	CDS_variant	2	B4,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781834.1

170 aa

170

DUF7895

PF25433 DUF7895 96-168 aa

XP_057781835.1

161 aa

161

DUF7895

PF25433 DUF7895 87-159 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781834.1`	Pfam	`PF25433`	DUF7895	Domain	96	168	1.3e-39	135.1	Domain of unknown function (DUF7895)
`XP_057781835.1`	Pfam	`PF25433`	DUF7895	Domain	87	159	1.3e-39	135.1	Domain of unknown function (DUF7895)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925852.1
TTTGAAAAGAGAGAAACTAATATCACTGCCGTAGTTTCCATGAATGCATACGAGCCATTAAATCCGCTGCGTGTATCAGCTCTTACCTTTTCGTAAATGCAAATGGAGCTAAAGTTGCAGAATCTAAATCTTTCACTCGCTTCCTTCAATTTCACTTCTACAAGTTCAAATTCGAGAGTCAGTTATGGATCCCTGAATGCATACAAGGCAAAAACACGAAGTAGAGAGACAGTAAAAGTACTGTCTTCACTACCAGAAAC...

XM_057925851.1
AGTTTCCATGAATGCATACGAGCCATTAAATCCGCTGCGTGTATCAGCTCTTACCTTTTCGTAAATGCAAATGGAGCTAAAGTTGCAGAATCTAAATCTTTCACTCGCTTCCTTCAATTTCAGTAAGCCAGAACCAGGAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTTTTTGCAGACTTTTTTTAATCTCAGTGTTGTAACTTAGCAAAGGAGATGAGGCATTACTTCATTGCG...

CDS

2 records

下载 CDS FASTA

LOC131000084
ATGCAAATGGAGCTAAAGTTGCAGAATCTAAATCTTTCACTCGCTTCCTTCAATTTCACTTCTACAAGTTCAAATTCGAGAGTCAGTTATGGATCCCTGAATGCATACAAGGCAAAAACACGAAGTAGAGAGACAGTAAAAGTACTGTCTTCACTACCAGAAACAGCAGCCTCTGTAGCAGTGGCTGCAACAGTTGTCGGCGCAGCTGCTACGTTTCTGATGAGAAGAACTAAAAGTTCTGAATCGACTGAGGCTCCTAC...

LOC131000084
ATGTTTTCATCAGCTTTTTCTAAAGTCTTGAAACAAAATGGGAATCTGCAGTGTAAGTTGTCATTCTCAATACTTGGTTGTGCAGCTTCTACAAGTTCAAATTCGAGAGTCAGTTATGGATCCCTGAATGCATACAAGGCAAAAACACGAAGTAGAGAGACAGTAAAAGTACTGTCTTCACTACCAGAAACAGCAGCCTCTGTAGCAGTGGCTGCAACAGTTGTCGGCGCAGCTGCTACGTTTCTGATGAGAAGAACTAA...

Protein

2 records

下载 Protein FASTA

XP_057781834.1
MFSSAFSKVLKQNGNLQCKLSFSILGCAASTSSNSRVSYGSLNAYKAKTRSRETVKVLSSLPETAASVAVAATVVGAAATFLMRRTKSSESTEAPTRTCDDCGGSGVCSECKGEGFVLKRLSEESAERARLMSQNAATRYTAGLPKKWSYCTKCSSTRSCITCDGRGILR

XP_057781835.1
MQMELKLQNLNLSLASFNFTSTSSNSRVSYGSLNAYKAKTRSRETVKVLSSLPETAASVAVAATVVGAAATFLMRRTKSSESTEAPTRTCDDCGGSGVCSECKGEGFVLKRLSEESAERARLMSQNAATRYTAGLPKKWSYCTKCSSTRSCITCDGRGILR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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