当前解析结果
SmilChr08G000531| 统一新 Gene ID | SmilChr08G000531 |
|---|---|
| 名称 | SmilChr08G000531 |
| 描述 | uncharacterized SmilChr08G000531 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 3862083 - 3871885 / - |
| NCBI Gene ID | LOC131000121 |
|---|---|
| GeneID | 131000121 |
| locus_tag | - |
| NCBI Name | LOC131000121 |
| 原始查询 | LOC131000121 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817342]; symbol=AT2G27980; hit=AT2G27980; species=arabidopsis; confidence=medium |
| 产物 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817342]; symbol=AT2G27980; hit=AT2G27980; species=arabidopsis; confidence=medium |
| Arabidopsis | AT2G27980 (AT2G27980)Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:817342] identity=40.6; qcov=1.08; evalue=0; confidence=medium |
| Rice | Os06g0101000 (B1460A05.22)- identity=41.4; qcov=0.882; evalue=0; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00628 (PHD); PF16135 (TDBD); PF23011 (PHD-1st_NSD); PF23209 (IDM1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000121 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057781874.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057781874.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057781874.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057781874.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057781874.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:3862433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr8:3862672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,B98,C57 |
Chr8:3862718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B118 |
Chr8:3862726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr8:3864581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A7,B59,C74,C84 |
Chr8:3864906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C85 |
Chr8:3865390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B136,C60 |
Chr8:3865920 |
AT |
A |
1bp_deletion | frameshift_variant | 9 | B127,B128,B5,B63,B95,C1,C54,C79,C9 |
Chr8:3865941 |
C |
CG |
1bp_insertion | frameshift_variant | 27 | A10,A15,A18,A23,A24,B101,B117,B118,B122,B23,B27,B33,B4,B82,B85,B94,C10,C15,C28,C34,C39,C49,C52,C58,C8,C84,D9 |
Chr8:3866712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:3866871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:3867634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781874.1PF16135
TDBD 363-418 aa
PF16135
TDBD 562-606 aa
PF23011
PHD-1st_NSD 621-665 aa
PF00628
PHD 625-664 aa
PF23209
IDM1_C 841-980 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781874.1 |
Pfam | PF16135 |
TDBD | Domain | 363 | 418 | 7.9e-32 | 109.7 | Tify domain binding domain |
XP_057781874.1 |
Pfam | PF16135 |
TDBD | Domain | 562 | 606 | 7.9e-32 | 109.7 | Tify domain binding domain |
XP_057781874.1 |
Pfam | PF23011 |
PHD-1st_NSD | Domain | 621 | 665 | 4.9e-10 | 40.1 | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 |
XP_057781874.1 |
Pfam | PF00628 |
PHD | Domain | 625 | 664 | 4.2e-09 | 37.0 | PHD-finger |
XP_057781874.1 |
Pfam | PF23209 |
IDM1_C | Domain | 841 | 980 | 2e-52 | 177.7 | Increased DNA methylation 1, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。