Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000534`

染色体: Chr08 坐标: 3886678-3891878 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000534`
名称	SmilChr08G000534
描述	uncharacterized SmilChr08G000534
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3886678 - 3891878 / `+`

ID 对照

NCBI Gene ID	`LOC131000123`
GeneID	`131000123`
locus_tag	`-`
NCBI Name	`LOC131000123`
原始查询	`LOC131000123`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Ring/U-Box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817339]; symbol=AT2G27950; hit=AT2G27950; species=arabidopsis; confidence=medium
产物	Ring/U-Box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817339]; symbol=AT2G27950; hit=AT2G27950; species=arabidopsis; confidence=medium
Arabidopsis	`AT2G27950` (AT2G27950) Ring/U-Box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817339] identity=38.7; qcov=1.05; evalue=7.3e-113; confidence=medium
Rice	`Os09g0570500` (OsRFPHC-16) - identity=48.7; qcov=0.408; evalue=7.67e-72; confidence=low
GO	-
KEGG	-
Pfam	PF13920 (zf-C3HC4_3)
InterPro	-
eggNOG	-
NR	GeneID:131000123

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057781876.1`
2	Nucleus	细胞核	0.60000	`XP_057781876.1`
3	Cytosol	细胞质基质	0.20000	`XP_057781876.1`
4	Chromosome	染色体	0.00000	`XP_057781876.1`
5	Centromere	着丝粒	0.00000	`XP_057781876.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3888107`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr8:3888622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B107,B127,C6
`Chr8:3889032`	`TGG`	`T`	2bp_deletion	frameshift_variant	5	B48,C16,C28,C8,C84
`Chr8:3889032`	`TGG`	`T`	2bp_deletion	CDS_variant	5	B48,C16,C28,C8,C84
`Chr8:3889210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C80,D11
`Chr8:3889330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B53,B62,B86,C24
`Chr8:3889394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B53,B62,B86,C24
`Chr8:3889442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B47,C20,C35,C55
`Chr8:3889491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B121,B132,B37,B52
`Chr8:3889587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:3889588`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,B47,C20,C35,C55
`Chr8:3889610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,C18,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781876.1

689 aa

344

689

zf-C3HC4_3

PF13920 zf-C3HC4_3 635-678 aa

XP_057781877.1

689 aa

344

689

zf-C3HC4_3

PF13920 zf-C3HC4_3 635-678 aa

XP_057781878.1

689 aa

344

689

zf-C3HC4_3

PF13920 zf-C3HC4_3 635-678 aa

XP_057781879.1

655 aa

328

655

zf-C3HC4_3

PF13920 zf-C3HC4_3 601-644 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781876.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	635	678	9.3e-09	35.7	Zinc finger, C3HC4 type (RING finger)
`XP_057781877.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	635	678	9.3e-09	35.7	Zinc finger, C3HC4 type (RING finger)
`XP_057781878.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	635	678	9.3e-09	35.7	Zinc finger, C3HC4 type (RING finger)
`XP_057781879.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	601	644	8.9e-09	35.7	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057925894.1
AAAATTTTCGAAACGAATTATGTTAATATATAATAAATGGCGCCGCGGCCATGTCCCCTCACCCCCTAATTTTTCGCTGTTGCTATTTATTTTTCATAAATTCCCTCTCTCTCTCTCTCTCTAGCTCTAGAAACATTGCTCTGTGCAACTGATTCTTTGTCTCTGCCATACTGTTGCATTTGCTGTCGAGAACTGGTATTGTAGCTGAAAGGTGCTTCAGTTATTTTTCCTGAATTATATTAGATATTCTGCAGACATTG...

XM_057925893.1
GAATTATGTTAATATATAATAAATGGCGCCGCGGCCATGTCCCCTCACCCCCTAATTTTTCGCTGTTGCTATTTATTTTTCATAAATTCCCTCTCTCTCTCTCTCTCTAGCTCTAGAAACATTGCTCTGTGCAACTGATTCTTTGTCTCTGCCATACTGTTGCATTTGCTGTCGAGAACTGGTATTGTAGCTGAAAGGTGCTTCAGTTATTTTTCCTGAATTATATTAGATATTCTGCAGACATTGTTTGATTGTGTAAT...

CDS

4 records

下载 CDS FASTA

LOC131000123
ATGAATAGTTGTCCTAAGGGTCATCCATCTTATGGATCCAATCGCAAAAACCGTTCATGGCAATGTGATGGTGATATTGAATCTAAAAGGGTAAGAATTCTCAGAGAACGGGCACAGAATACTACCCAGCGGAGAAGTGTCTGTGCGTCATCTGGAGAGGGAGTTGCTGAAGTTAGGTCTCAAACTGTGCAGGTGAGTGATGGATTGGTAATTAATCGTCCAGAGATTGGTGCACGAAGGCCTCTTCGTAGGTTATGTGG...

Protein

4 records

下载 Protein FASTA

XP_057781876.1
MNSCPKGHPSYGSNRKNRSWQCDGDIESKRVRILRERAQNTTQRRSVCASSGEGVAEVRSQTVQVSDGLVINRPEIGARRPLRRLCGRQTLLDLLLKAQSERKRELVSLSEQKPVSDFAHRNRIQALLRGRFLRNGRLVVDERPSSVAATELGYLRQRQTVSDLREGFLSKLETGSASVNSAGSDSCSNDGNKDEAESTCTEGGVTGNRIAANLEGTTTDGNMNMQELEVQIDEAEEPVLVNEGCQGDVSLCAESATSVE...

XP_057781877.1
MNSCPKGHPSYGSNRKNRSWQCDGDIESKRVRILRERAQNTTQRRSVCASSGEGVAEVRSQTVQVSDGLVINRPEIGARRPLRRLCGRQTLLDLLLKAQSERKRELVSLSEQKPVSDFAHRNRIQALLRGRFLRNGRLVVDERPSSVAATELGYLRQRQTVSDLREGFLSKLETGSASVNSAGSDSCSNDGNKDEAESTCTEGGVTGNRIAANLEGTTTDGNMNMQELEVQIDEAEEPVLVNEGCQGDVSLCAESATSVE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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