Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000545`

染色体: Chr08 坐标: 3975864-3979938 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000545`
名称	SmilChr08G000545
描述	uncharacterized SmilChr08G000545
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	3975864 - 3979938 / `+`

ID 对照

NCBI Gene ID	`LOC131000134`
GeneID	`131000134`
locus_tag	`-`
NCBI Name	`LOC131000134`
原始查询	`LOC131000134`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469]; symbol=SRPK4; hit=AT3G53030; species=arabidopsis; confidence=high
产物	ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469]; symbol=SRPK4; hit=AT3G53030; species=arabidopsis; confidence=high
Arabidopsis	`AT3G53030` (SRPK4) ser/arg-rich protein kinase 4 [Source:NCBI gene (formerly Entrezgene);Acc:824469] identity=68.4; qcov=0.956; evalue=0; confidence=high
Rice	`Os03g0748400` - identity=67.9; qcov=0.679; evalue=2.05e-174; confidence=high
GO	GO:0000245 (spliceosomal complex assembly); GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0050684 (regulation of mRNA processing)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131000134

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781890.1`
2	Cytoplasm	细胞质	1.00000	`XP_057781890.1`
3	Cytosol	细胞质基质	1.00000	`XP_057781890.1`
4	Chromosome	染色体	0.00000	`XP_057781890.1`
5	Centromere	着丝粒	0.00000	`XP_057781890.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:3977174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A5,B33,B46,B80
`Chr8:3977447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B33,B46,B80
`Chr8:3977605`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr8:3977641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B65
`Chr8:3978011`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:3978870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr8:3979228`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B47,C20,C35,C55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781890.1

546 aa

273

546

Pkinase

PK_Tyr_Ser-Thr

Pkinase

PF00069 Pkinase 49-188 aa PF07714 PK_Tyr_Ser-Thr 51-188 aa PF07714 PK_Tyr_Ser-Thr 309-374 aa PF00069 Pkinase 315-480 aa

XP_057781892.1

546 aa

273

546

Pkinase

PK_Tyr_Ser-Thr

Pkinase

PF00069 Pkinase 49-188 aa PF07714 PK_Tyr_Ser-Thr 51-188 aa PF07714 PK_Tyr_Ser-Thr 309-374 aa PF00069 Pkinase 315-480 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781890.1`	Pfam	`PF00069`	Pkinase	Domain	49	188	4.7e-45	154.8	Protein kinase domain
`XP_057781890.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	51	188	1.9e-18	67.4	Protein tyrosine and serine/threonine kinase
`XP_057781890.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	309	374	1.9e-18	67.4	Protein tyrosine and serine/threonine kinase
`XP_057781890.1`	Pfam	`PF00069`	Pkinase	Domain	315	480	4.7e-45	154.8	Protein kinase domain
`XP_057781892.1`	Pfam	`PF00069`	Pkinase	Domain	49	188	4.7e-45	154.8	Protein kinase domain
`XP_057781892.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	51	188	1.9e-18	67.4	Protein tyrosine and serine/threonine kinase
`XP_057781892.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	309	374	1.9e-18	67.4	Protein tyrosine and serine/threonine kinase
`XP_057781892.1`	Pfam	`PF00069`	Pkinase	Domain	315	480	4.7e-45	154.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925907.1
AATGAGTAGTGATAGAGTAGTAGTTAGTATAGCGTAAAAGAAAATAAAAGAATGATTCTAGCCGTCTTCCTCACTCCAAAATAAACCCTAACCAGTAACGTCTCTGTAACGTCTATCTCTCTCTCCACTCTCTCTCTCTCTCTACCACACTCGCAGACCGTACCGACATAAGTCAGAGCTGCTGTTTCTTGTTGATCGCATTGAAATCTGCAGCTTTCGATTCACGGATGGCGGAAGAGGCGGCGCCCGAGAGGAACTGC...

XM_057925909.1
AATGAGTAGTGATAGAGTAGTAGTTAGTATAGCGTAAAAGAAAATAAAAGAATGATTCTAGCCGTCTTCCTCACTCCAAAATAAACCCTAACCAGTAACGTCTCTGTAACGTCTATCTCTCTCTCCACTCTCTCTCTCTCTCTACCACACTCGCAGACCGTACCGACATAAGTCAGAGCTGCTGTTTCTTGTTGATCGCATTGAAATCTGCAGCTTTCGATTCACGGATGGCGGAAGAGGCGGCGCCCGAGAGGAACTGC...

CDS

2 records

下载 CDS FASTA

LOC131000134
ATGGCGGAAGAGGCGGCGCCCGAGAGGAACTGCGGTGATCGGAGCGAGACGAGCGACTACACGTCGGAGGATGAGGGGACGGAGGACTACAGGCGCGGCGGATATCACGCCGTGCGGATCGGCGATACATTCAAGCATGGAAGATATGTTGTTCAGAGCAAGCTCGGCTGGGGCCATTTCTCCACCGTCTGGCTAGCTTGGGACATTCAGAAATCTATATATGTAGCCCTGAAGGTTCAAAAGAGCGCACAACACTACAC...

Protein

2 records

下载 Protein FASTA

XP_057781890.1
MAEEAAPERNCGDRSETSDYTSEDEGTEDYRRGGYHAVRIGDTFKHGRYVVQSKLGWGHFSTVWLAWDIQKSIYVALKVQKSAQHYTEAAMDEITILKQIAEGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPLNKVKEICFHILVGLDYLHRKLSIIHTDLKPENILLLSVIDPSKDPTKSGAPLILPTSKGKIAFESQASKDVKGSCSDFSKNQKKKIRRKANPTARRCAGNEVSEEAE...

XP_057781892.1
MAEEAAPERNCGDRSETSDYTSEDEGTEDYRRGGYHAVRIGDTFKHGRYVVQSKLGWGHFSTVWLAWDIQKSIYVALKVQKSAQHYTEAAMDEITILKQIAEGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPLNKVKEICFHILVGLDYLHRKLSIIHTDLKPENILLLSVIDPSKDPTKSGAPLILPTSKGKIAFESQASKDVKGSCSDFSKNQKKKIRRKANPTARRCAGNEVSEEAE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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