当前解析结果
SmilChr08G000558| 统一新 Gene ID | SmilChr08G000558 |
|---|---|
| 名称 | SmilChr08G000558 |
| 描述 | glucomannan 4-beta-mannosyltransferase 2-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 4057680 - 4062131 / + |
| NCBI Gene ID | LOC131000148 |
|---|---|
| GeneID | 131000148 |
| locus_tag | - |
| NCBI Name | LOC131000148 |
| 原始查询 | LOC131000148 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucomannan 4-beta-mannosyltransferase 2-like |
| 产物 | glucomannan 4-beta-mannosyltransferase 2-like |
| Arabidopsis | AT5G22740 (CSLA02)cellulose synthase-like A02 [Source:NCBI gene (formerly Entrezgene);Acc:832337] identity=66.9; qcov=0.996; evalue=0; confidence=high |
| Rice | Os06g0625700 (OsCslA9)- identity=63.2; qcov=0.974; evalue=0; confidence=high |
| GO | GO:0005794 (Golgi apparatus); GO:0051753 (mannan synthase activity) |
| KEGG | - |
| Pfam | PF00535 (Glycos_transf_2); PF13506 (Glyco_transf_21); PF13632 (Glyco_trans_2_3); PF13641 (Glyco_tranf_2_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000148 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.40000 | XP_057781910.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057781910.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057781910.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057781910.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057781910.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:4059185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr8:4059273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B118,B38,B39,C8,D11 |
Chr8:4059361 |
A |
AC |
1bp_insertion | frameshift_variant | 1 | B5 |
Chr8:4059361 |
A |
AC |
1bp_insertion | CDS_variant | 1 | B5 |
Chr8:4059363 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | B5 |
Chr8:4059363 |
AT |
A |
1bp_deletion | CDS_variant | 1 | B5 |
Chr8:4059367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr8:4059960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr8:4059961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B38,B39,D11 |
Chr8:4059964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr8:4061231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,C28,C29 |
Chr8:4061252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057781910.1PF13641
Glyco_tranf_2_3 96-328 aa
PF00535
Glycos_transf_2 99-254 aa
PF13506
Glyco_transf_21 186-372 aa
PF13632
Glyco_trans_2_3 187-391 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781910.1 |
Pfam | PF13641 |
Glyco_tranf_2_3 | Domain | 96 | 328 | 1.6e-14 | 54.9 | Glycosyltransferase like family 2 |
XP_057781910.1 |
Pfam | PF00535 |
Glycos_transf_2 | Domain | 99 | 254 | 9.5e-07 | 29.6 | Glycosyl transferase family 2 |
XP_057781910.1 |
Pfam | PF13506 |
Glyco_transf_21 | Domain | 186 | 372 | 9.1e-06 | 25.5 | Glycosyl transferase family 21 |
XP_057781910.1 |
Pfam | PF13632 |
Glyco_trans_2_3 | Domain | 187 | 391 | 1.8e-21 | 77.6 | Glycosyl transferase family group 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。