Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000616`

染色体: Chr08 坐标: 4597038-4602662 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000616`
名称	SmilChr08G000616
描述	fatty acyl-CoA reductase 3-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4597038 - 4602662 / `-`

ID 对照

NCBI Gene ID	`LOC131000193`
GeneID	`131000193`
locus_tag	`-`
NCBI Name	`LOC131000193`
原始查询	`LOC131000193`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	fatty acyl-CoA reductase 3-like
产物	fatty acyl-CoA reductase 3-like
Arabidopsis	`AT4G33790` (CER4) Jojoba acyl CoA reductase-related male sterility protein [Source:NCBI gene (formerly Entrezgene);Acc:829521] identity=62; qcov=0.959; evalue=0; confidence=high
Rice	`Os08g0298700` - identity=54.5; qcov=0.966; evalue=2.22e-148; confidence=high
GO	GO:0010345 (suberin biosynthetic process); GO:0035336 (long-chain fatty-acyl-CoA metabolic process); GO:0043231 (intracellular membrane-bounded organelle); GO:0080019 (alcohol-forming very long-chain fatty acyl-CoA reductase activity)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01370 (Epimerase); PF03015 (Sterile); PF07993 (NAD_binding_4)
InterPro	-
eggNOG	-
NR	GeneID:131000193

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057781959.1`
2	Peroxisome	过氧化物酶体	0.20000	`XP_057781959.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057781960.1`
4	Lipid droplet	脂滴	0.20000	`XP_057781960.1`
5	Nucleus	细胞核	0.00000	`XP_057781959.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4597212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B104,B12,B38,B39,D11
`Chr8:4597215`	`CTG`	`C`	2bp_deletion	frameshift_variant	5	B104,B12,B38,B39,D11
`Chr8:4597215`	`CTG`	`C`	2bp_deletion	CDS_variant	5	B104,B12,B38,B39,D11
`Chr8:4597218`	`CT`	`C`	1bp_deletion	frameshift_variant	5	B104,B12,B38,B39,D11
`Chr8:4597218`	`CT`	`C`	1bp_deletion	CDS_variant	5	B104,B12,B38,B39,D11
`Chr8:4597695`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B118
`Chr8:4597695`	`C`	`CT`	1bp_insertion	CDS_variant	1	B118
`Chr8:4597705`	`CA`	`C`	1bp_deletion	frameshift_variant	5	A13,B124,C27,C3,C8
`Chr8:4597705`	`CA`	`C`	1bp_deletion	CDS_variant	5	A13,B124,C27,C3,C8
`Chr8:4598719`	`AT`	`A`	1bp_deletion	frameshift_variant	2	B6,C67
`Chr8:4598719`	`AT`	`A`	1bp_deletion	CDS_variant	2	B6,C67
`Chr8:4599289`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781959.1

490 aa

245

490

Epimerase

NAD_binding_4

Sterile

PF01370 Epimerase 15-171 aa PF07993 NAD_binding_4 17-318 aa PF03015 Sterile 391-490 aa

XP_057781960.1

414 aa

207

414

Epimerase

NAD_binding_4

PF01370 Epimerase 15-171 aa PF07993 NAD_binding_4 17-318 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781959.1`	Pfam	`PF01370`	Epimerase	Family	15	171	2.4e-08	34.4	NAD dependent epimerase/dehydratase family
`XP_057781959.1`	Pfam	`PF07993`	NAD_binding_4	Family	17	318	1.5e-73	247.9	Male sterility protein
`XP_057781959.1`	Pfam	`PF03015`	Sterile	Family	391	490	4.2e-17	62.8	Male sterility protein
`XP_057781960.1`	Pfam	`PF01370`	Epimerase	Family	15	171	4.8e-08	33.4	NAD dependent epimerase/dehydratase family
`XP_057781960.1`	Pfam	`PF07993`	NAD_binding_4	Family	17	318	8.6e-74	248.6	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925976.1
ATAATTGCGTGCACTCTTATATATATATATATATATGTGTGTGTGTGTGTGTGTGTTTCACAGTTTACCACCTCTCTCTCTCTCTCTCTCATATTAGTAGTTGTGAAATGGAGGTGGGCAGTATTCTTGAGTTCATGGAGGGAAGGTCTATTCTAGTAACTGGGGCAGCTGGCTTTCTTGCAAAGGTTTTTATTGAGAAGATTCTGAGAGTACAACCGAATGTGAAGAAGCTTTATCTTCTCTTGAGGGCTCCAGACTCA...

XM_057925977.1
ATTAGTAGTTGTGAAATGGAGGTGGGCAGTATTCTTGAGTTCATGGAGGGAAGGTCTATTCTAGTAACTGGGGCAGCTGGCTTTCTTGCAAAGGTTTTTATTGAGAAGATTCTGAGAGTACAACCGAATGTGAAGAAGCTTTATCTTCTCTTGAGGGCTCCAGACTCAAACTCAGCTATGTTAAGGTTTCACACTCAGATCATGTCAAAGGATTTATTTAGGGTTCTGAAAGAGAAGCATGGTGGAAATTTAAATTCCTT...

CDS

2 records

下载 CDS FASTA

LOC131000193
ATGGAGGTGGGCAGTATTCTTGAGTTCATGGAGGGAAGGTCTATTCTAGTAACTGGGGCAGCTGGCTTTCTTGCAAAGGTTTTTATTGAGAAGATTCTGAGAGTACAACCGAATGTGAAGAAGCTTTATCTTCTCTTGAGGGCTCCAGACTCAAACTCAGCTATGTTAAGGTTTCACACTCAGATCATGTCAAAGGATTTATTTAGGGTTCTGAAAGAGAAGCATGGTGGAAATTTAAATTCCTTAATTTCACAAAAAGT...

Protein

2 records

下载 Protein FASTA

XP_057781959.1
MEVGSILEFMEGRSILVTGAAGFLAKVFIEKILRVQPNVKKLYLLLRAPDSNSAMLRFHTQIMSKDLFRVLKEKHGGNLNSLISQKVRVVAGDITCEDLGVQDSLLLEEMINEVDVVVNLAANTNFDERYDISIGINTLGAKHVLNFAKRCDKLKVLLHVSTAYVSGEKGGLILERGFKMGETLNGARGLDIDAEKKLIDDTLKSLEAEGCSHEIIKSKMKDLGIQRARKYGWPNTYVFTKAMGEMLLGHLRNEMAVVII...

XP_057781960.1
MEVGSILEFMEGRSILVTGAAGFLAKVFIEKILRVQPNVKKLYLLLRAPDSNSAMLRFHTQIMSKDLFRVLKEKHGGNLNSLISQKVRVVAGDITCEDLGVQDSLLLEEMINEVDVVVNLAANTNFDERYDISIGINTLGAKHVLNFAKRCDKLKVLLHVSTAYVSGEKGGLILERGFKMGETLNGARGLDIDAEKKLIDDTLKSLEAEGCSHEIIKSKMKDLGIQRARKYGWPNTYVFTKAMGEMLLGHLRNEMAVVII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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