当前解析结果
SmilChr01G004190| 统一新 Gene ID | SmilChr01G004190 |
|---|---|
| 名称 | SmilChr01G004190 |
| 描述 | glutaredoxin-C5, chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60364982 - 60367666 / + |
| NCBI Gene ID | LOC131000204 |
|---|---|
| GeneID | 131000204 |
| locus_tag | - |
| NCBI Name | LOC131000204 |
| 原始查询 | LOC131000204 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutaredoxin-C5, chloroplastic |
| 产物 | glutaredoxin-C5%2C chloroplastic |
| Arabidopsis | AT4G28730 (GrxC5)Glutaredoxin family protein [Source:NCBI gene (formerly Entrezgene);Acc:828994] identity=65.7; qcov=0.734; evalue=2.73e-44; confidence=medium |
| Rice | Os08g0565800 (OsGRX21)- identity=77; qcov=0.517; evalue=1.47e-38; confidence=medium |
| GO | GO:0005737 (cytoplasm); GO:0015038 (glutathione disulfide oxidoreductase activity); GO:0034599 (cellular response to oxidative stress) |
| KEGG | - |
| Pfam | PF00462 (Glutaredoxin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000204 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057781975.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057781983.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057781975.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057781975.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057781975.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60365326 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,C19,C52 |
Chr1:60365371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B21,B72 |
Chr1:60365615 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B25,B79,C35,D6,D7 |
Chr1:60366823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B121,B60,B98,C48 |
Chr1:60367170 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C22,C44 |
Chr1:60367182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,C36,D6 |
Chr1:60367213 |
CAT |
C |
2bp_deletion | frameshift_variant | 8 | A16,B118,B46,B6,B65,B80,C30,C37 |
Chr1:60367331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A22,B12,B49,B51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057781975.1PF00462
Glutaredoxin 84-147 aa
XP_057781983.1PF00462
Glutaredoxin 84-147 aa
XP_057781991.1PF00462
Glutaredoxin 84-146 aa
XP_057782000.1PF00462
Glutaredoxin 84-144 aa
XP_057782007.1PF00462
Glutaredoxin 84-143 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057781975.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 84 | 147 | 3.7e-16 | 59.8 | Glutaredoxin |
XP_057781983.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 84 | 147 | 2.9e-16 | 60.1 | Glutaredoxin |
XP_057781991.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 84 | 146 | 2.5e-14 | 53.9 | Glutaredoxin |
XP_057782000.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 84 | 144 | 4.8e-14 | 53.0 | Glutaredoxin |
XP_057782007.1 |
Pfam | PF00462 |
Glutaredoxin | Domain | 84 | 143 | 1.5e-13 | 51.5 | Glutaredoxin |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。