Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000641`

染色体: Chr08 坐标: 4770529-4787827 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000641`
名称	SmilChr08G000641
描述	helicase protein MOM1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	4770529 - 4787827 / `+`

ID 对照

NCBI Gene ID	`LOC131000217`
GeneID	`131000217`
locus_tag	`-`
NCBI Name	`LOC131000217`
原始查询	`LOC131000217`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	helicase protein MOM1-like
产物	helicase protein MOM1-like
Arabidopsis	`AT1G08060` (MOM) ATP-dependent helicase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837322] identity=36.8; qcov=0.379; evalue=4.4e-122; confidence=low
Rice	`Os06g0102800` - identity=39.8; qcov=0.521; evalue=0; confidence=medium
GO	GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0000785 (chromatin); GO:0003677 (DNA binding); GO:0003682 (chromatin binding); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006338 (chromatin remodeling); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00628 (PHD); PF25029 (MOM1)
InterPro	-
eggNOG	-
NR	GeneID:131000217

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057781992.1`
2	Chromosome	染色体	0.20000	`XP_057781992.1`
3	Centromere	着丝粒	0.00000	`XP_057781992.1`
4	Chromatin	染色质	0.00000	`XP_057781992.1`
5	Telomere	端粒	0.00000	`XP_057781992.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:4770806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,C18,C22,C72
`Chr8:4770950`	`CAG`	`C`	2bp_deletion	frameshift_variant	9	A18,B110,B124,B16,B6,B8,B88,C22,C67
`Chr8:4771151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120
`Chr8:4771199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:4771659`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:4771814`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:4772857`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B128,B133
`Chr8:4775254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B60,B77,C24,C56
`Chr8:4775834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B110,C20
`Chr8:4778819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:4779175`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,B19
`Chr8:4780326`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B56,B96,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781992.1

2252 aa

1126

2252

PHD

SNF2-rel_dom

MOM1

PF00628 PHD 314-357 aa PF00176 SNF2-rel_dom 567-805 aa PF25029 MOM1 1205-1319 aa

XP_057781993.1

2248 aa

1124

2248

PHD

SNF2-rel_dom

MOM1

PF00628 PHD 314-357 aa PF00176 SNF2-rel_dom 567-805 aa PF25029 MOM1 1205-1319 aa

XP_057781994.1

2195 aa

1098

2195

PHD

SNF2-rel_dom

MOM1

PF00628 PHD 314-357 aa PF00176 SNF2-rel_dom 567-805 aa PF25029 MOM1 1205-1319 aa

XP_057781995.1

2015 aa

1008

2015

PHD

SNF2-rel_dom

MOM1

PF00628 PHD 77-120 aa PF00176 SNF2-rel_dom 330-568 aa PF25029 MOM1 968-1082 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781992.1`	Pfam	`PF00628`	PHD	Domain	314	357	3.3e-05	24.5	PHD-finger
`XP_057781992.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	567	805	3.3e-10	40.3	SNF2-related domain
`XP_057781992.1`	Pfam	`PF25029`	MOM1	Domain	1205	1319	1.3e-44	151.8	MOM1-like domain
`XP_057781993.1`	Pfam	`PF00628`	PHD	Domain	314	357	3.3e-05	24.5	PHD-finger
`XP_057781993.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	567	805	3.3e-10	40.3	SNF2-related domain
`XP_057781993.1`	Pfam	`PF25029`	MOM1	Domain	1205	1319	1.3e-44	151.8	MOM1-like domain
`XP_057781994.1`	Pfam	`PF00628`	PHD	Domain	314	357	3.3e-05	24.6	PHD-finger
`XP_057781994.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	567	805	3.1e-10	40.3	SNF2-related domain
`XP_057781994.1`	Pfam	`PF25029`	MOM1	Domain	1205	1319	1.2e-44	151.9	MOM1-like domain
`XP_057781995.1`	Pfam	`PF00628`	PHD	Domain	77	120	1.1e-05	26.0	PHD-finger
`XP_057781995.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	330	568	2.7e-10	40.5	SNF2-related domain
`XP_057781995.1`	Pfam	`PF25029`	MOM1	Domain	968	1082	1.1e-44	152.0	MOM1-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926009.1
TTTGATTTTTTTTTTTTTTTGAGGGAGCCTTTATTTGTAAATTTTAACGGAGCAATTTGCTTGCAACAGCAATTTATTCTCGGGAGTCGCGAAGCAGATGGGTCGACCAAGTTAGCAAAATTAGGGATTTTCCGAGAGGTGAATTTTTCTCCGAGAATTTCAAGTGTTTTCTGCATTTTGATGCCGTAATTCAGGTTTGCAGTGACAATGGTGAGTGATACTCGATCTACTCGCAAAAGTAGAGACGAGTTGGATGGACA...

XM_057926011.1
TTTGATTTTTTTTTTTTTTTGAGGGAGCCTTTATTTGTAAATTTTAACGGAGCAATTTGCTTGCAACAGCAATTTATTCTCGGGAGTCGCGAAGCAGATGGGTCGACCAAGTTAGCAAAATTAGGGATTTTCCGAGAGGTGAATTTTTCTCCGAGAATTTCAAGTGTTTTCTGCATTTTGATGCCGTAATTCAGGTTTGCAGTGACAATGGTGAGTGATACTCGATCTACTCGCAAAAGTAGAGACGAGTTGGATGGACA...

CDS

4 records

下载 CDS FASTA

LOC131000217
ATGGTGAGTGATACTCGATCTACTCGCAAAAGTAGAGACGAGTTGGATGGACATGGTTCGAATCAGAAAGCGAATATGATAAAGAATCCATTGTTAGGAAGCCCAGGAAACCCTGGTAGAGCCCGACATGCGACAGAGAGCCCTCCGAGTGTTCGAAAATCCAAGCGTCTTGAGAAGGAGATGCCGCCATTGATTCCTCCTATGAAGAGGACATCAGAGAGACTAGGCAGAGGTAATACACCGAGGAAGTTTGGTAGGGG...

Protein

4 records

下载 Protein FASTA

XP_057781992.1
MVSDTRSTRKSRDELDGHGSNQKANMIKNPLLGSPGNPGRARHATESPPSVRKSKRLEKEMPPLIPPMKRTSERLGRGNTPRKFGRGKIDFSSKESAEEPLSKLKKTKEKPVIQVTMESKKAQLELEVVGMKRKTMSARKFKSLFKRQQIKGIVPDGGDELERSENLVDVCSDNSSNGISSQPMEDTEDAADDGSIDQVPEGVLPDSASRHYQADVENDISVDAASAFLVCENCNLEGTCLICSKSKRVRYDSPKQELCS...

XP_057781993.1
MVSDTRSTRKSRDELDGHGSNQKANMIKNPLLGSPGNPGRARHATESPPSVRKSKRLEKEMPPLIPPMKRTSERLGRGNTPRKFGRGKIDFSSKESAEEPLSKLKKTKEKPVIQVTMESKKAQLELEVVGMKRKTMSARKFKSLFKRQQIKGIVPDGGDELERSENLVDVCSDNSSNGISSQPMEDTEDAADDGSIDQVPEGVLPDSASRHYQADVENDISVDAASAFLVCENCNLEGTCLICSKSKRVRYDSPKQELCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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