Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000701`

染色体: Chr08 坐标: 5199197-5216335 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000701`
名称	SmilChr08G000701
描述	ubiquitin C-terminal hydrolase 12-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5199197 - 5216335 / `-`

ID 对照

NCBI Gene ID	`LOC131000278`
GeneID	`131000278`
locus_tag	`-`
NCBI Name	`LOC131000278`
原始查询	`LOC131000278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin C-terminal hydrolase 12-like
产物	ubiquitin C-terminal hydrolase 12-like
Arabidopsis	`AT5G06600` (UBP12) ubiquitin-specific protease 12 [Source:NCBI gene (formerly Entrezgene);Acc:830548] identity=74.7; qcov=1; evalue=0; confidence=high
Rice	`Os01g0771400` (OsM2) - identity=68.4; qcov=0.847; evalue=0; confidence=high
GO	GO:0004197 (cysteine-type endopeptidase activity); GO:0004843 (cysteine-type deubiquitinase activity); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination); GO:0031647 (regulation of protein stability)
KEGG	smil03083 (Polycomb repressive complex - Salvia miltiorrhiza (redroot sage))
Pfam	PF00443 (UCH); PF00917 (MATH); PF12436 (USP7_ICP0_bdg); PF13423 (UCH_1); PF14533 (USP7_C2); PF22486 (MATH_2)
InterPro	-
eggNOG	-
NR	GeneID:131000278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782078.1`
2	Cytoplasm	细胞质	1.00000	`XP_057782078.1`
3	Nucleoplasm	核质	0.60000	`XP_057782078.1`
4	Cytosol	细胞质基质	0.60000	`XP_057782078.1`
5	Chromosome	染色体	0.00000	`XP_057782078.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5202023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A22
`Chr8:5205701`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	B125
`Chr8:5205701`	`TCA`	`T`	2bp_deletion	CDS_variant	1	B125
`Chr8:5206279`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,B46
`Chr8:5206669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:5207548`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr8:5209119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr8:5209835`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A15
`Chr8:5209835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr8:5209881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A23,B123,C22,C4,C46
`Chr8:5212219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr8:5212263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B67,B93

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782078.1

1119 aa

560

1119

MATH_2

MATH

UCH_1

UCH

USP7_ICP0_bdg

USP7_C2

PF22486 MATH_2 55-178 aa PF00917 MATH 60-180 aa PF13423 UCH_1 198-473 aa PF00443 UCH 198-520 aa PF12436 USP7_ICP0_bdg 624-876 aa PF14533 USP7_C2 886-1098 aa

XP_057782079.1

1118 aa

559

1118

MATH_2

MATH

UCH_1

UCH

USP7_ICP0_bdg

USP7_C2

PF22486 MATH_2 55-178 aa PF00917 MATH 60-180 aa PF13423 UCH_1 198-473 aa PF00443 UCH 198-520 aa PF12436 USP7_ICP0_bdg 624-876 aa PF14533 USP7_C2 886-1097 aa

XP_057782080.1

1117 aa

558

1117

MATH_2

MATH

UCH_1

UCH

USP7_ICP0_bdg

USP7_C2

PF22486 MATH_2 53-176 aa PF00917 MATH 58-178 aa PF13423 UCH_1 196-471 aa PF00443 UCH 196-518 aa PF12436 USP7_ICP0_bdg 622-874 aa PF14533 USP7_C2 884-1096 aa

XP_057782081.1

1116 aa

558

1116

MATH_2

MATH

UCH_1

UCH

USP7_ICP0_bdg

USP7_C2

PF22486 MATH_2 53-176 aa PF00917 MATH 58-178 aa PF13423 UCH_1 196-471 aa PF00443 UCH 196-518 aa PF12436 USP7_ICP0_bdg 622-874 aa PF14533 USP7_C2 884-1095 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782078.1`	Pfam	`PF22486`	MATH_2	Domain	55	178	2e-38	132.4	MATH domain
`XP_057782078.1`	Pfam	`PF00917`	MATH	Domain	60	180	1.7e-15	58.0	MATH domain
`XP_057782078.1`	Pfam	`PF13423`	UCH_1	Domain	198	473	4.4e-16	60.1	Ubiquitin carboxyl-terminal hydrolase
`XP_057782078.1`	Pfam	`PF00443`	UCH	Family	198	520	5.7e-58	197.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782078.1`	Pfam	`PF12436`	USP7_ICP0_bdg	Family	624	876	9.1e-77	258.4	ICP0-binding domain of Ubiquitin-specific protease 7
`XP_057782078.1`	Pfam	`PF14533`	USP7_C2	Family	886	1098	1.4e-52	179.1	Ubiquitin-specific protease C-terminal
`XP_057782079.1`	Pfam	`PF22486`	MATH_2	Domain	55	178	2.1e-38	132.4	MATH domain
`XP_057782079.1`	Pfam	`PF00917`	MATH	Domain	60	180	9.3e-16	58.8	MATH domain
`XP_057782079.1`	Pfam	`PF13423`	UCH_1	Domain	198	473	4.3e-16	60.1	Ubiquitin carboxyl-terminal hydrolase
`XP_057782079.1`	Pfam	`PF00443`	UCH	Family	198	520	5.7e-58	197.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782079.1`	Pfam	`PF12436`	USP7_ICP0_bdg	Family	624	876	9.1e-77	258.4	ICP0-binding domain of Ubiquitin-specific protease 7
`XP_057782079.1`	Pfam	`PF14533`	USP7_C2	Family	886	1097	3.1e-52	178.0	Ubiquitin-specific protease C-terminal
`XP_057782080.1`	Pfam	`PF22486`	MATH_2	Domain	53	176	2e-38	132.4	MATH domain
`XP_057782080.1`	Pfam	`PF00917`	MATH	Domain	58	178	1.7e-15	58.0	MATH domain
`XP_057782080.1`	Pfam	`PF13423`	UCH_1	Domain	196	471	4.3e-16	60.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782080.1`	Pfam	`PF00443`	UCH	Family	196	518	5.7e-58	197.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782080.1`	Pfam	`PF12436`	USP7_ICP0_bdg	Family	622	874	9e-77	258.4	ICP0-binding domain of Ubiquitin-specific protease 7
`XP_057782080.1`	Pfam	`PF14533`	USP7_C2	Family	884	1096	1.4e-52	179.1	Ubiquitin-specific protease C-terminal
`XP_057782081.1`	Pfam	`PF22486`	MATH_2	Domain	53	176	2.1e-38	132.4	MATH domain
`XP_057782081.1`	Pfam	`PF00917`	MATH	Domain	58	178	9.3e-16	58.8	MATH domain
`XP_057782081.1`	Pfam	`PF13423`	UCH_1	Domain	196	471	4.3e-16	60.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782081.1`	Pfam	`PF00443`	UCH	Family	196	518	5.7e-58	197.2	Ubiquitin carboxyl-terminal hydrolase
`XP_057782081.1`	Pfam	`PF12436`	USP7_ICP0_bdg	Family	622	874	9e-77	258.4	ICP0-binding domain of Ubiquitin-specific protease 7
`XP_057782081.1`	Pfam	`PF14533`	USP7_C2	Family	884	1095	3e-52	178.0	Ubiquitin-specific protease C-terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009093695.1
TCATTCATTCCTTTCCCCACCACCTTTTCCCCCCCTTTGCACCCTGACTTCCATTTTCCTAAACCTGAAAACATCTGCAAAATTCCCATCAAAATCCAATCCAATCCAATCCAATCTAGGTTAATTCTGCCTCAAATTCTACTCGACTTCTCCTCACATGACTGTCATGGCGCCTCCTGCCCCAAATGAGCAAGAGGAGGAGGACATGTTAGTTCCTCGATCAGATTTGGTGGAAGGGCCTCAGCCAATGGCAGTGGAAG...

XM_057926098.1
AGATTTCATTCATTCCTTTCCCCACCACCTTTTCCCCCCCTTTGCACCCTGACTTCCATTTTCCTAAACCTGAAAACATCTGCAAAATTCCCATCAAAATCCAATCCAATCCAATCCAATCTAGGTTAATTCTGCCTCAAATTCTACTCGACTTCTCCTCACATGACTGTCATGGCGCCTCCTGCCCCAAATGAGCAAGAGGAGGAGGACATGTTAGTTCCTCGATCAGATTTGGTGGAAGGGCCTCAGCCAATGGCAGT...

CDS

4 records

下载 CDS FASTA

LOC131000278
ATGACTGTCATGGCGCCTCCTGCCCCAAATGAGCAAGAGGAGGAGGACATGTTAGTTCCTCGATCAGATTTGGTGGAAGGGCCTCAGCCAATGGCAGTGGAAGAAGCAACAGAAAATAGTGTGGAAAACCAGTCAACAGAGGATCCTCGCACAGCAAAATTTACTTGGAAGATTGAAAATTTTTCTAGGATAACTACTAAGAAGCTATATTCTGGAATATTTGATCTTGGTGATTACAAATGGCGGATTCTTATTTTTCC...

Protein

4 records

下载 Protein FASTA

XP_057782078.1
MTVMAPPAPNEQEEEDMLVPRSDLVEGPQPMAVEAPEATENSVENQSTEDPRTAKFTWKIENFSRITTKKLYSGIFDLGDYKWRILIFPKGNNADYLSMYLDVADSAGLPYGWTRYAHFSLAIVNQVHSKYSVRKETQHQFNARENDWGFTSFMPLGELYDPSRGYLVNDTCLVEAEVAVYKAMDPWLYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPFFRKAVYHMPTNVNDMPSASIPLALQSLFYKLQYSDNSVA...

XP_057782079.1
MTVMAPPAPNEQEEEDMLVPRSDLVEGPQPMAVEAPEATENSVENQSTEDPRTAKFTWKIENFSRITTKKLYSGIFDLGDYKWRILIFPKGNNADYLSMYLDVADSAGLPYGWTRYAHFSLAIVNQVHSKYSVRKETQHQFNARENDWGFTSFMPLGELYDPSRGYLVNDTCLVEAEVAVYKAMDPWLYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPFFRKAVYHMPTNVNDMPSASIPLALQSLFYKLQYSDNSVA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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