Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000722`

染色体: Chr08 坐标: 5357162-5365921 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000722`
名称	SmilChr08G000722
描述	indole-3-acetaldehyde oxidase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5357162 - 5365921 / `+`

ID 对照

NCBI Gene ID	`LOC131000281`
GeneID	`131000281`
locus_tag	`-`
NCBI Name	`LOC131000281`
原始查询	`LOC131000281`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	indole-3-acetaldehyde oxidase-like
产物	indole-3-acetaldehyde oxidase-like
Arabidopsis	`AT3G43600` (AAO2) aldehyde oxidase 2 [Source:NCBI gene (formerly Entrezgene);Acc:823457] identity=57.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os07g0281700` (AO) - identity=54.8; qcov=1.02; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0016491 (oxidoreductase activity); GO:0071949 (FAD binding)
KEGG	smil00906 (Carotenoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00941 (FAD_binding_5); PF01315 (Ald_Xan_dh_C); PF02738 (MoCoBD_1); PF03450 (CO_deh_flav_C); PF20256 (MoCoBD_2)
InterPro	-
eggNOG	-
NR	GeneID:131000281

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782091.1`
2	Cytosol	细胞质基质	0.40000	`XP_057782091.1`
3	Nucleus	细胞核	0.00000	`XP_057782091.1`
4	Chromosome	染色体	0.00000	`XP_057782091.1`
5	Centromere	着丝粒	0.00000	`XP_057782091.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5359224`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	C34
`Chr8:5359224`	`GCC`	`G`	2bp_deletion	CDS_variant	1	C34
`Chr8:5359227`	`GCC`	`G`	2bp_deletion	frameshift_variant	1	C34
`Chr8:5359227`	`GCC`	`G`	2bp_deletion	CDS_variant	1	C34
`Chr8:5359231`	`C`	`CTG`	2bp_insertion	frameshift_variant	1	C34
`Chr8:5359231`	`C`	`CTG`	2bp_insertion	CDS_variant	1	C34
`Chr8:5359236`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:5359798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B133,B99
`Chr8:5360202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C57
`Chr8:5360421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B35,B42,C61,D11
`Chr8:5360451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B35,B42,C61,D11
`Chr8:5360634`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782091.1

1207 aa

604

1207

FAD_binding_5

CO_deh_flav_C

Ald_Xan_dh_C

MoCoBD_1

MoCoBD_2

PF00941 FAD_binding_5 111-282 aa PF03450 CO_deh_flav_C 296-400 aa PF01315 Ald_Xan_dh_C 450-559 aa PF02738 MoCoBD_1 594-823 aa PF20256 MoCoBD_2 852-1114 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782091.1`	Pfam	`PF00941`	FAD_binding_5	Domain	111	282	5.9e-37	127.8	FAD binding domain in molybdopterin dehydrogenase
`XP_057782091.1`	Pfam	`PF03450`	CO_deh_flav_C	Domain	296	400	2.2e-20	73.4	CO dehydrogenase flavoprotein C-terminal domain
`XP_057782091.1`	Pfam	`PF01315`	Ald_Xan_dh_C	Domain	450	559	1.2e-29	103.6	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
`XP_057782091.1`	Pfam	`PF02738`	MoCoBD_1	Domain	594	823	5.8e-78	262.0	Molybdopterin cofactor-binding domain
`XP_057782091.1`	Pfam	`PF20256`	MoCoBD_2	Domain	852	1114	2.1e-70	238.2	Molybdopterin cofactor-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009093701.1
AAGAGCCTCAAGCTCGGCTGCGGCGAAGGTGGGTGTGGAGCTTGTGTGGTGGTGGTGTCGAGATTCAACCCTGTGCTTAAGCAAAGAGAGATTTTCAGTGTGAGTTCTTGTCTGACTCTTGTCTGCAGCGTCAATGGCTTCTCCATCACCACAAGCGAAGGCCTCGGAAATAGCAAAGACGGCTTCCACCCAATCCAGCAAAGGTTTGCCGGATTCCACGCCTCTCAATGCGGCTTCTGCACTCCCGGATTCTGCATGTC...

XR_009093700.1
AAGAGCCTCAAGCTCGGCTGCGGCGAAGGTGGGTGTGGAGCTTGTGTGGTGGTGGTGTCGAGATTCAACCCTGTGCTTAAGCAAAGAGAGATTTTCAGTGTGAGTTCTTGTCTGACTCTTGTCTGCAGCGTCAATGGCTTCTCCATCACCACAAGCGAAGGCCTCGGAAATAGCAAAGACGGCTTCCACCCAATCCAGCAAAGGTTTGCCGGATTCCACGCCTCTCAATGCGGCTTCTGCACTCCCGGATTCTGCATGTC...

CDS

1 records

下载 CDS FASTA

LOC131000281
ATGTCGTTTTTCTCAGCGCTCGCCGACGCCGACGCAACTCCTCCTCACGCGCCGCCGCAGCCCCCCCGCGGATTCTCCAGCCTCACGCTCTCTCAAGCCCAAACGGCTATAACAGGAAACCTCTGCCGATGCACCGGCTACCGCCCCATTGCCGACGCCTGCAAGAGCTTCGCCGCCGATGTAGATCTCGAGGATTTGGGGATCAACTCTTTCTGGAAAAGGGGCGAAGCTAGGGTTAGTAAATTGCCACCGTACAATCC...

Protein

1 records

下载 Protein FASTA

XP_057782091.1
MSFFSALADADATPPHAPPQPPRGFSSLTLSQAQTAITGNLCRCTGYRPIADACKSFAADVDLEDLGINSFWKRGEARVSKLPPYNPEEDVCPYVQQCREECESILNSERLSWFTPVSLEELGSLLITGDGASVKLVVGNTGTGYYKETEKYDRYIDLRYIPELSMVTRDASGVEFGAAFPISRVISYLKEEGKSSLVLEKIAEHMERVASIFIRNSASIGGNLVMAQRRSFPSDIATLLLAVGSTLALLRGRARERITM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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