Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000702`

染色体: Chr08 坐标: 5223333-5227220 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000702`
名称	SmilChr08G000702
描述	protein AIR2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5223333 - 5227220 / `+`

ID 对照

NCBI Gene ID	`LOC131000287`
GeneID	`131000287`
locus_tag	`-`
NCBI Name	`LOC131000287`
原始查询	`LOC131000287`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein AIR2-like
产物	protein AIR2-like
Arabidopsis	`AT3G43590` (AT3G43590) zinc knuckle (CCHC-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:823456] identity=39.6; qcov=1; evalue=7.47e-85; confidence=medium
Rice	`Os11g0573200` - identity=41.1; qcov=0.495; evalue=4.19e-39; confidence=medium
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00098 (zf-CCHC)
InterPro	-
eggNOG	-
NR	GeneID:131000287

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782103.1`
2	Chromosome	染色体	0.00000	`XP_057782103.1`
3	Centromere	着丝粒	0.00000	`XP_057782103.1`
4	Chromatin	染色质	0.00000	`XP_057782103.1`
5	Telomere	端粒	0.00000	`XP_057782103.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5223697`	`AAG`	`A`	2bp_deletion	frameshift_variant	6	A9,B38,B45,C5,C66,D9
`Chr8:5223718`	`AGG`	`A`	2bp_deletion	frameshift_variant	7	A9,B38,B45,B78,C5,C66,D9
`Chr8:5224191`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C19,C78,C9
`Chr8:5225462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B89,C4
`Chr8:5225506`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B12,C64,C66,C82
`Chr8:5225625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr8:5226380`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B121,B137,B138

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782103.1

485 aa

242

485

zf-CCHC

PF00098 zf-CCHC 171-187 aa PF00098 zf-CCHC 213-228 aa PF00098 zf-CCHC 317-333 aa

XP_057782104.1

467 aa

234

467

zf-CCHC

PF00098 zf-CCHC 153-169 aa PF00098 zf-CCHC 195-210 aa PF00098 zf-CCHC 299-315 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782103.1`	Pfam	`PF00098`	zf-CCHC	Domain	171	187	8.7e-21	73.7	Zinc knuckle
`XP_057782103.1`	Pfam	`PF00098`	zf-CCHC	Domain	213	228	8.7e-21	73.7	Zinc knuckle
`XP_057782103.1`	Pfam	`PF00098`	zf-CCHC	Domain	317	333	8.7e-21	73.7	Zinc knuckle
`XP_057782104.1`	Pfam	`PF00098`	zf-CCHC	Domain	153	169	7.4e-21	74.0	Zinc knuckle
`XP_057782104.1`	Pfam	`PF00098`	zf-CCHC	Domain	195	210	7.4e-21	74.0	Zinc knuckle
`XP_057782104.1`	Pfam	`PF00098`	zf-CCHC	Domain	299	315	7.4e-21	74.0	Zinc knuckle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926120.1
GGCCTGGCCATCGCCCATGCCCGACCGCCCACAGGCCCGGCCCTGTAGTTCCTCTCTTTTTGGTTCCCCGAATTGAATTTAGGGTTAGGTTTTTCAAAATCTCTCGATTCCTCGGAAATTTCATTCAGGAATGGGGAGGAGAGGGAGTTCGAAAGCGGCGAAAATGGAGGAATATTCGTCGTCGGAAGAAGACAGAAGAAAGCGGAAATCCCCAATTGAAGCGGCGAGCGATGACGATGACGCCGAGGCCAACGAAGATC...

XM_057926121.1
GCCATCGCCCATGCCCGACCGCCCACAGGCCCGGCCCTGTAGTTCCTCTCTTTTTGGTTCCCCGAATTGAATTTAGGGTTAGGTTTTTCAAAATCTCTCGATTCCTCGGAAATTTCATTCAGGAATGGGGAGGAGAGGGAGTTCGAAAGCGGCGAAAATGGAGGAATATTCGTCGTCGGAAGAAGACAGAAGAAAGCGGAAATCCCCAATTGAAGCGGCGAGCGATGACGATGACGCCGAGGCCAACGAAGATCTCAGTC...

CDS

2 records

下载 CDS FASTA

LOC131000287
ATGGGGAGGAGAGGGAGTTCGAAAGCGGCGAAAATGGAGGAATATTCGTCGTCGGAAGAAGACAGAAGAAAGCGGAAATCCCCAATTGAAGCGGCGAGCGATGACGATGACGCCGAGGCCAACGAAGATCTCAGTCTCAAAATCGTTCAGAAATCCATGCGGCGAGCCGCTAAGAATGATCCCTGGGGAGACGGCGTAGCGGAAGTAGTTGAGAATTTGAAGGAAGAGCGGAGTAAGAGAGAGAAGAAGAAGAAGAGGAG...

Protein

2 records

下载 Protein FASTA

XP_057782103.1
MGRRGSSKAAKMEEYSSSEEDRRKRKSPIEAASDDDDAEANEDLSLKIVQKSMRRAAKNDPWGDGVAEVVENLKEERSKREKKKKRRKSKEVELPGDAVTNEIDAGFKDFCGELFLVDNVKEKDKPEIDNTAEVASIAVETNPVEVSDNAVLRKLLRGPRYFDPPDNSWGACYNCGEEGHTTVNCTSARRKKPCFVCGSFEHNAKQCSKGRDCFICKQQGHRAKDCPERYKSSKICLKCGDLGHEMFSCRNDYCPDDLKE...

XP_057782104.1
MGRRGSSKAAKMEEYSSSEEDRRKRKSPIEAASDDDDAEANEDLSLKIVQKSMRRAAKNDPWGDGVAEVVENLKEERSKREKKKKRRKSKEVELPGDAVDNVKEKDKPEIDNTAEVASIAVETNPVEVSDNAVLRKLLRGPRYFDPPDNSWGACYNCGEEGHTTVNCTSARRKKPCFVCGSFEHNAKQCSKGRDCFICKQQGHRAKDCPERYKSSKICLKCGDLGHEMFSCRNDYCPDDLKEIQCYVCGTYGHLCCKDYG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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