当前解析结果
SmilChr08G000714| 统一新 Gene ID | SmilChr08G000714 |
|---|---|
| 名称 | SmilChr08G000714 |
| 描述 | uncharacterized SmilChr08G000714 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5301006 - 5303972 / + |
| NCBI Gene ID | LOC131000290 |
|---|---|
| GeneID | 131000290 |
| locus_tag | - |
| NCBI Name | LOC131000290 |
| 原始查询 | LOC131000290 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | isopentenyl-diphosphate delta-isomerase [Source:NCBI gene (formerly Entrezgene);Acc:835655]; symbol=AT5G55610; hit=AT5G55610; species=arabidopsis; confidence=high |
| 产物 | isopentenyl-diphosphate delta-isomerase [Source:NCBI gene (formerly Entrezgene);Acc:835655]; symbol=AT5G55610; hit=AT5G55610; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G55610 (AT5G55610)isopentenyl-diphosphate delta-isomerase [Source:NCBI gene (formerly Entrezgene);Acc:835655] identity=51.2; qcov=0.847; evalue=7.91e-91; confidence=high |
| Rice | Os12g0498800- identity=52.1; qcov=0.858; evalue=1.56e-76; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000290 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057782107.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057782107.1 |
| 3 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057782107.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782107.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782107.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5301408 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B122 |
Chr8:5301477 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:5301522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr8:5302567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C22,C61 |
Chr8:5302705 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr8:5302707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr8:5302712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5303111 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C62 |
Chr8:5303111 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C62 |
Chr8:5303116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C69 |
Chr8:5303258 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:5303513 |
G |
GAA |
2bp_insertion | frameshift_variant | 1 | C48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。