当前解析结果
SmilChr08G000728| 统一新 Gene ID | SmilChr08G000728 |
|---|---|
| 名称 | SmilChr08G000728 |
| 描述 | ETHYLENE INSENSITIVE 3-like 1 protein |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5406003 - 5409037 / + |
| NCBI Gene ID | LOC131000303 |
|---|---|
| GeneID | 131000303 |
| locus_tag | - |
| NCBI Name | LOC131000303 |
| 原始查询 | LOC131000303 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ETHYLENE INSENSITIVE 3-like 1 protein |
| 产物 | ETHYLENE INSENSITIVE 3-like 1 protein |
| Arabidopsis | AT3G20770 (EIN3)Ethylene insensitive 3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:821625] identity=65.2; qcov=0.959; evalue=0; confidence=high |
| Rice | Os03g0324200 (EIL1)- identity=57.5; qcov=0.851; evalue=2.24e-164; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04873 (EIN3_DNA-bd); PF27048 (EIN3_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000303 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782129.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782129.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782129.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782129.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782129.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5407208 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | A21,B46 |
Chr8:5407208 |
A |
AG |
1bp_insertion | CDS_variant | 2 | A21,B46 |
Chr8:5407357 |
CGG |
C |
2bp_deletion | frameshift_variant | 2 | B96,C42 |
Chr8:5407357 |
CGG |
C |
2bp_deletion | CDS_variant | 2 | B96,C42 |
Chr8:5407389 |
GAT |
G |
2bp_deletion | frameshift_variant | 2 | B96,C42 |
Chr8:5407389 |
GAT |
G |
2bp_deletion | CDS_variant | 2 | B96,C42 |
Chr8:5407393 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B96,C42 |
Chr8:5407393 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B96,C42 |
Chr8:5407458 |
CTT |
C |
2bp_deletion | frameshift_variant | 1 | C30 |
Chr8:5407458 |
CTT |
C |
2bp_deletion | CDS_variant | 1 | C30 |
Chr8:5407505 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A11,A6 |
Chr8:5407545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,A3,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782129.1PF27048
EIN3_N 90-161 aa
PF04873
EIN3_DNA-bd 181-303 aa
XP_057782130.1PF27048
EIN3_N 90-161 aa
PF04873
EIN3_DNA-bd 181-303 aa
XP_057782131.1PF27048
EIN3_N 90-161 aa
PF04873
EIN3_DNA-bd 181-303 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782129.1 |
Pfam | PF27048 |
EIN3_N | Domain | 90 | 161 | 3.6e-46 | 155.4 | Ethylene insensitive 3, N-terminal domain |
XP_057782129.1 |
Pfam | PF04873 |
EIN3_DNA-bd | Domain | 181 | 303 | 4.6e-69 | 230.9 | Ethylene insensitive 3, DNA-binding domain |
XP_057782130.1 |
Pfam | PF27048 |
EIN3_N | Domain | 90 | 161 | 3.6e-46 | 155.4 | Ethylene insensitive 3, N-terminal domain |
XP_057782130.1 |
Pfam | PF04873 |
EIN3_DNA-bd | Domain | 181 | 303 | 4.6e-69 | 230.9 | Ethylene insensitive 3, DNA-binding domain |
XP_057782131.1 |
Pfam | PF27048 |
EIN3_N | Domain | 90 | 161 | 3.6e-46 | 155.4 | Ethylene insensitive 3, N-terminal domain |
XP_057782131.1 |
Pfam | PF04873 |
EIN3_DNA-bd | Domain | 181 | 303 | 4.6e-69 | 230.9 | Ethylene insensitive 3, DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。