Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004195`

染色体: Chr01 坐标: 60409766-60413421 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004195`
名称	SmilChr01G004195
描述	uncharacterized SmilChr01G004195
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60409766 - 60413421 / `+`

ID 对照

NCBI Gene ID	`LOC131000305`
GeneID	`131000305`
locus_tag	`-`
NCBI Name	`LOC131000305`
原始查询	`LOC131000305`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825888]; symbol=AT4G05400; hit=AT4G05400; species=arabidopsis; confidence=high
产物	copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825888]; symbol=AT4G05400; hit=AT4G05400; species=arabidopsis; confidence=high
Arabidopsis	`AT4G05400` (AT4G05400) copper ion binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825888] identity=56.8; qcov=0.963; evalue=1.73e-81; confidence=high
Rice	`Os01g0511200` - identity=54.2; qcov=0.963; evalue=5.97e-79; confidence=high
GO	GO:0005761 (mitochondrial ribosome); GO:0005762 (mitochondrial large ribosomal subunit)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131000305

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782136.1`
2	Nucleus	细胞核	0.00000	`XP_057782136.1`
3	Chromosome	染色体	0.00000	`XP_057782136.1`
4	Centromere	着丝粒	0.00000	`XP_057782136.1`
5	Chromatin	染色质	0.00000	`XP_057782136.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60411041`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:60411058`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B75
`Chr1:60411097`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B21,B72
`Chr1:60411137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:60411142`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:60411149`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B123,B124,B18,B64,C36
`Chr1:60411173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B10,B131,C22
`Chr1:60411176`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:60411212`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C16
`Chr1:60411212`	`TC`	`T`	1bp_deletion	CDS_variant	1	C16
`Chr1:60411245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C30
`Chr1:60411305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,C36,C47,C79

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926153.1
TTTGTCTCTATTAATCGGTGGAAAATAAGCTAGGGATTGGAGTTTTTCTTTTTTTCCTGTCGTTTTTGTTCGTTATTTGCAATGAAATTATGTAAAAAGATTGGAGATCTGATTAAGTTAATGATTTACTAATTTAATGTAATAATAGGATTATAGTATATAAATTATATAGGAATATATATGTGACTAACTCTATTTTCCCAATATAATTCTAATTAAAAAAAAAAAACTTGATTAGCTACCCATTCCCCCAATTCGTC...

XM_057926168.1
TTTTCTTTTTTTCCTGTCGTTTTTGTTCGTTATTTGCAATGAAATTATGTAAAAAGATTGGAGATCTGATTAAGTTAATGATTTACTAATTTAATGTAATAATAGGATTATAGTATATAAATTATATAGGAATATATATGTGACTAACTCTATTTTCCCAATATAATTCTAATTAAAAAAAAAAAACTTGATTAGCTACCCATTCCCCCAATTCGTCTCTCCCCATTTCTTCACTCTGCATCTCGCCGCCTCTATCCTCT...

CDS

3 records

下载 CDS FASTA

LOC131000305
ATGCTGAGCTCGACTGTTGTCAAGAAATTGAAACCTTCAAACTCATCCTTGGATTCTCTAAGCTACCAGTTCCTGCAGAGATGCTCTGTCAGTGGCACAGCGAAGGGGAAAGGTAAGATCAAAACCGGGCAGCCTTTGAAGCGATCAAAGGTCACTACGAAAAAGGGGTCAGCATCCGATCCATCTGCGAAAGAAGGGCCGAGGAAGAAGAGCAGTTTTGATGAAATGGTTGAGCAATGTCTGACTTCCACTGCACCACT...

Protein

3 records

下载 Protein FASTA

XP_057782136.1
MLSSTVVKKLKPSNSSLDSLSYQFLQRCSVSGTAKGKGKIKTGQPLKRSKVTTKKGSASDPSAKEGPRKKSSFDEMVEQCLTSTAPLRFLKTKEKEREAEREMMGLISKANEQAKEKLKKQKDEFTSPWIIGTSGLDYITLGLVDADKIPKYELTVEDGRRLAKEYSRTLMRKHRARQAAETALLQCKKEAIEALPEHLKAAALVPDLTPFPANRFMAALTPPIEGYSEKINEAARKSIEGKKRR

XP_057782142.1
MLSSTVVKKLKPSNSSLDSLSYQFLQRCSVSGTAKGKGKIKTGQPLKRSKVTTKKGSASDPSAKEGPRKKSSFDEMVEQCLTSTAPLRFLKTKEKEREAEREMMGLISKANEQAKEKLKKQKDEFTSPWIIGTSGLDYITLGLVDADKIPKYELTVEDGRRLAKEYSRTLMRKHRARQAAETALLQCKKEAIEALPEHLKAAALVPDLTPFPANRFMAALTPPIEGYSEKINEAARKSIEGKKRR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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