当前解析结果
SmilChr08G000740| 统一新 Gene ID | SmilChr08G000740 |
|---|---|
| 名称 | SmilChr08G000740 |
| 描述 | transcription factor GAMYB-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5476595 - 5482196 / - |
| NCBI Gene ID | LOC131000316 |
|---|---|
| GeneID | 131000316 |
| locus_tag | - |
| NCBI Name | LOC131000316 |
| 原始查询 | LOC131000316 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor GAMYB-like |
| 产物 | transcription factor GAMYB-like |
| Arabidopsis | AT5G06100 (MYB33)myb domain protein 33 [Source:NCBI gene (formerly Entrezgene);Acc:830497] identity=43; qcov=0.826; evalue=2.07e-83; confidence=medium |
| Rice | Os01g0812000 (GAMYB)- identity=44; qcov=0.996; evalue=1.39e-97; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782145.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782145.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782145.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782145.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782145.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5476864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr8:5476870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A4,B107,D9 |
Chr8:5476906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C27 |
Chr8:5476921 |
GTC |
G |
2bp_deletion | frameshift_variant | 5 | B135,B28,B95,B99,C26 |
Chr8:5476921 |
GTC |
G |
2bp_deletion | CDS_variant | 5 | B135,B28,B95,B99,C26 |
Chr8:5476954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B86,C19,C65 |
Chr8:5477086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr8:5477087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr8:5477384 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr8:5477396 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5477402 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B129,B29,B79,C15 |
Chr8:5477546 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C24,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782145.1PF00249
Myb_DNA-binding 38-85 aa
PF13921
Myb_DNA-bind_6 41-101 aa
PF00249
Myb_DNA-binding 91-134 aa
PF13921
Myb_DNA-bind_6 94-138 aa
XP_057782146.1PF00249
Myb_DNA-binding 38-85 aa
PF13921
Myb_DNA-bind_6 41-101 aa
PF00249
Myb_DNA-binding 91-134 aa
PF13921
Myb_DNA-bind_6 94-138 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782145.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 38 | 85 | 5.3e-35 | 120.0 | Myb-like DNA-binding domain |
XP_057782145.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 41 | 101 | 3.2e-22 | 79.2 | Myb-like DNA-binding domain |
XP_057782145.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 91 | 134 | 5.3e-35 | 120.0 | Myb-like DNA-binding domain |
XP_057782145.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 94 | 138 | 3.2e-22 | 79.2 | Myb-like DNA-binding domain |
XP_057782146.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 38 | 85 | 3.6e-35 | 120.6 | Myb-like DNA-binding domain |
XP_057782146.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 41 | 101 | 1.7e-22 | 80.0 | Myb-like DNA-binding domain |
XP_057782146.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 91 | 134 | 3.6e-35 | 120.6 | Myb-like DNA-binding domain |
XP_057782146.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 94 | 138 | 1.7e-22 | 80.0 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。