Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000743`

染色体: Chr08 坐标: 5504538-5508668 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000743`
名称	SmilChr08G000743
描述	uncharacterized SmilChr08G000743
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	5504538 - 5508668 / `+`

ID 对照

NCBI Gene ID	`LOC131000322`
GeneID	`131000322`
locus_tag	`-`
NCBI Name	`LOC131000322`
原始查询	`LOC131000322`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	MIF4G domain-containing protein / MA3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844433]; symbol=AT1G80930; hit=AT1G80930; species=arabidopsis; confidence=high
产物	MIF4G domain-containing protein / MA3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844433]; symbol=AT1G80930; hit=AT1G80930; species=arabidopsis; confidence=high
Arabidopsis	`AT1G80930` (AT1G80930) MIF4G domain-containing protein / MA3 domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:844433] identity=83.9; qcov=0.89; evalue=0; confidence=high
Rice	`Os12g0256300` (Os12g15420) - identity=80.9; qcov=0.883; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0071013 (catalytic step 2 spliceosome)
KEGG	-
Pfam	PF02847 (MA3); PF02854 (MIF4G)
InterPro	-
eggNOG	-
NR	GeneID:131000322

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782158.1`
2	Cytosol	细胞质基质	1.00000	`XP_057782158.1`
3	Nucleus	细胞核	0.80000	`XP_057782158.1`
4	Nucleoplasm	核质	0.20000	`XP_057782158.1`
5	Chromosome	染色体	0.00000	`XP_057782158.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:5505238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B124,B128,B2,B46
`Chr8:5505266`	`C`	`CA`	1bp_insertion	frameshift_variant	1	A23
`Chr8:5505266`	`C`	`CA`	1bp_insertion	CDS_variant	1	A23
`Chr8:5505268`	`CT`	`C`	1bp_deletion	frameshift_variant	1	A23
`Chr8:5505268`	`CT`	`C`	1bp_deletion	CDS_variant	1	A23
`Chr8:5505296`	`GAT`	`G`	2bp_deletion	frameshift_variant	5	B1,B124,B128,B2,B46
`Chr8:5505296`	`GAT`	`G`	2bp_deletion	CDS_variant	5	B1,B124,B128,B2,B46
`Chr8:5505313`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B1,B57,C10,C75
`Chr8:5505341`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr8:5505347`	`G`	`GT`	1bp_insertion	frameshift_variant	48	A15,A18,A9,B101,B110,B115,B125,B13,B134,B136,B139,B140,B15,B19,B24,B31,B44,B45,B50,B61,B68,B72,B88,B97,C10,C11,C12,C15,C21,C27,C29,C31,C39,C4,C48,C50,C51,C55,C64,C66,C69,C73,C78,C82,C83,C84,C9,D6
`Chr8:5505359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B124,B128,B2,B46
`Chr8:5505417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782158.1

599 aa

300

599

MIF4G

MA3

PF02854 MIF4G 65-246 aa PF02847 MA3 350-456 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782158.1`	Pfam	`PF02854`	MIF4G	Repeat	65	246	5.3e-18	66.2	MIF4G domain
`XP_057782158.1`	Pfam	`PF02847`	MA3	Repeat	350	456	3.2e-29	101.9	MA3 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926175.1
CGGCCTTGCTTTCTCTCTCGAATTCCAGCCACCGGCAACCACCTCGGCTCCATCCCTACACTCCGCTGCCCCGCTGCTCGTCTCTCACAGTCTCACCCCCTTTTAGTATTCGGGTGTTGCGGTGCTTTCAAGAAGACGTTTCGTCGGCCACCGAAGTCAGGAGTTAGGAAGCATGACGAGTCACGAGAATGGTGATAGCTATAATAGCTCTAAGAATGAGAGGAATTTGACGACAAAGATATTGGCGAATATGGGAAGGA...

CDS

1 records

下载 CDS FASTA

LOC131000322
ATGACGAGTCACGAGAATGGTGATAGCTATAATAGCTCTAAGAATGAGAGGAATTTGACGACAAAGATATTGGCGAATATGGGAAGGAGTGGCGGAGTGTACGTTCCTCCGTTGAAGTTGGCCAGAATGATGAAGGAAATCGAGGATAATAGCAGCCTTGAATATCAAAGAATGACATGGGACGCTCTGAGGAAGAGTATCAATGGATTGGTGAACAAAGTGAACGCCACCAACATCAAAAACATCATTCCGGAGCTGTT...

Protein

1 records

下载 Protein FASTA

XP_057782158.1
MTSHENGDSYNSSKNERNLTTKILANMGRSGGVYVPPLKLARMMKEIEDNSSLEYQRMTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTHVFAALVAVVNTKFPEVGDLLLRRIILQLQRAFKRNDKPQLLAAVKFIAHLVNQQIVHELIALELLTLLLEKPTDDSVEVAVGFVTECGSLLQDLSPRGLHGIFERFRGILHEGEIDKRVQFLIEGLFALRKAKFQGYPAVRPELDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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