当前解析结果
SmilChr08G000750| 统一新 Gene ID | SmilChr08G000750 |
|---|---|
| 名称 | SmilChr08G000750 |
| 描述 | cysteine proteinase inhibitor-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5540242 - 5541947 / + |
| NCBI Gene ID | LOC131000330 |
|---|---|
| GeneID | 131000330 |
| locus_tag | - |
| NCBI Name | LOC131000330 |
| 原始查询 | LOC131000330 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cysteine proteinase inhibitor-like |
| 产物 | cysteine proteinase inhibitor-like |
| Arabidopsis | AT2G40880 (CYSA)cystatin A [Source:NCBI gene (formerly Entrezgene);Acc:818685] identity=38.5; qcov=0.878; evalue=2.8e-23; confidence=medium |
| Rice | Os01g0270100- identity=35.7; qcov=0.946; evalue=4.43e-23; confidence=medium |
| GO | GO:0004869 (cysteine-type endopeptidase inhibitor activity) |
| KEGG | - |
| Pfam | PF00031 (Cystatin); PF16845 (SQAPI) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000330 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057782172.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057782172.1 |
| 3 | Secreted | 分泌到胞外 | 0.40000 | XP_057782169.1 |
| 4 | Vacuole | 液泡 | 0.40000 | XP_057782171.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057782172.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5541177 |
GGC |
G |
2bp_deletion | frameshift_variant | 146 | A10,A13,A15,A16,A20,A23,A24,A3,A9,B10,B102,B103,B106,B107,B108,B109,B112,B114,B118,B119,B12,B121,B123,B124,B126,B128,B129,B13,B130,B131,B135,B136,B137,B138,B139,B14,B16,B17,B23,B27,B28,B29,B30,B31,B32,B33,B35,B36,B4,B41,B42,B43,B45,B46,B47,B49,B50,B51,B52,B53,B54,B55,B57,B59,B6,B60,B61,B62,B66,B69,B7,B70,B71,B72,B73,B75,B76,B78,B79,B8,B82,B84,B88,B89,B9,B93,B94,B97,B98,B99,C1,C13,C15,C17,C2,C20,C21,C25,C26,C28,C29,C3,C30,C32,C33,C34,C35,C38,C39,C41,C42,C43,C45,C47,C5,C51,C53,C54,C55,C56,C58,C59,C6,C61,C62,C63,C67,C68,C7,C73,C75,C76,C77,C78,C8,C80,C82,C84,C86,D10,D11,D3,D4,D5,D6,D8 |
Chr8:5541318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B37,C5,C60,C74 |
Chr8:5541484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B87,D9 |
Chr8:5541487 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:5541496 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B35,C61,D11 |
Chr8:5541634 |
TGA |
* |
2bp_deletion | CDS_variant | 3 | B104,C36,C8 |
Chr8:5541714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C61,C72 |
Chr8:5541755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr8:5541765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B22,C16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782169.1PF00031
Cystatin 26-94 aa
PF16845
SQAPI 38-95 aa
XP_057782171.1PF00031
Cystatin 26-94 aa
PF16845
SQAPI 38-95 aa
XP_057782172.1PF00031
Cystatin 5-73 aa
PF16845
SQAPI 17-74 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782169.1 |
Pfam | PF00031 |
Cystatin | Domain | 26 | 94 | 1.5e-16 | 61.1 | Cystatin domain |
XP_057782169.1 |
Pfam | PF16845 |
SQAPI | Domain | 38 | 95 | 8.9e-21 | 74.8 | Aspartic acid proteinase inhibitor |
XP_057782171.1 |
Pfam | PF00031 |
Cystatin | Domain | 26 | 94 | 2e-16 | 60.7 | Cystatin domain |
XP_057782171.1 |
Pfam | PF16845 |
SQAPI | Domain | 38 | 95 | 3.1e-20 | 73.0 | Aspartic acid proteinase inhibitor |
XP_057782172.1 |
Pfam | PF00031 |
Cystatin | Domain | 5 | 73 | 1.1e-16 | 61.5 | Cystatin domain |
XP_057782172.1 |
Pfam | PF16845 |
SQAPI | Domain | 17 | 74 | 5.6e-21 | 75.4 | Aspartic acid proteinase inhibitor |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。