当前解析结果
SmilChr08G000762| 统一新 Gene ID | SmilChr08G000762 |
|---|---|
| 名称 | SmilChr08G000762 |
| 描述 | BRCT domain-containing protein At4g02110 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5621218 - 5627730 / + |
| NCBI Gene ID | LOC131000343 |
|---|---|
| GeneID | 131000343 |
| locus_tag | - |
| NCBI Name | LOC131000343 |
| 原始查询 | LOC131000343 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BRCT domain-containing protein At4g02110 |
| 产物 | BRCT domain-containing protein At4g02110 |
| Arabidopsis | AT4G02110 (AT4G02110)transcription coactivator [Source:NCBI gene (formerly Entrezgene);Acc:828135] identity=61.4; qcov=0.206; evalue=4.02e-116; confidence=weak |
| Rice | Os03g0304400- identity=58.4; qcov=0.222; evalue=1.29e-123; confidence=weak |
| GO | - |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00533 (BRCT); PF00628 (PHD); PF12738 (PTCB-BRCT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000343 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782192.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057782192.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782192.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782192.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782192.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5621470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5621474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr8:5622008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B56,B96,C33,C85 |
Chr8:5622438 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B62,D11 |
Chr8:5622628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr8:5623164 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:5624063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr8:5624088 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B29 |
Chr8:5624152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B62,D11 |
Chr8:5624158 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr8:5624233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B127,B58 |
Chr8:5624331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782192.1PF12738
PTCB-BRCT 116-180 aa
PF00533
BRCT 116-185 aa
PF00533
BRCT 1135-1200 aa
PF00628
PHD 1376-1426 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782192.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 116 | 180 | 2.9e-20 | 72.7 | twin BRCT domain |
XP_057782192.1 |
Pfam | PF00533 |
BRCT | Domain | 116 | 185 | 1.9e-22 | 79.9 | BRCA1 C Terminus (BRCT) domain |
XP_057782192.1 |
Pfam | PF00533 |
BRCT | Domain | 1135 | 1200 | 1.9e-22 | 79.9 | BRCA1 C Terminus (BRCT) domain |
XP_057782192.1 |
Pfam | PF00628 |
PHD | Domain | 1376 | 1426 | 2.9e-07 | 31.1 | PHD-finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。