Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000764

染色体: Chr08 坐标: 5640563-5643284 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000764
名称SmilChr08G000764
描述uncharacterized SmilChr08G000764
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向5640563 - 5643284 / -

ID 对照

NCBI Gene IDLOC131000345
GeneID131000345
locus_tag-
NCBI NameLOC131000345
原始查询LOC131000345

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high
产物Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]; symbol=AT4G02100; hit=AT4G02100; species=arabidopsis; confidence=high
ArabidopsisAT4G02100 (AT4G02100)
Heat shock protein DnaJ with tetratricopeptide repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:828142]
identity=62.9; qcov=1; evalue=0; confidence=high
RiceOs03g0304500
-
identity=53; qcov=0.896; evalue=1.21e-161; confidence=high
GOGO:0005515 (protein binding)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131000345

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.40000 XP_057782198.1
2 Cytosol 细胞质基质 0.40000 XP_057782198.1
3 Nucleus 细胞核 0.20000 XP_057782198.1
4 Chromosome 染色体 0.00000 XP_057782198.1
5 Centromere 着丝粒 0.00000 XP_057782198.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:5640940 G A EMS_canonical_SNV CDS_variant 2 B66,B8
Chr8:5641030 C T EMS_canonical_SNV CDS_variant 1 B41
Chr8:5641042 C CAG 2bp_insertion frameshift_variant 88 A13,A16,A18,A23,A24,A4,A5,B1,B100,B105,B106,B109,B11,B111,B114,B115,B119,B120,B123,B124,B128,B129,B132,B133,B138,B139,B14,B18,B21,B24,B27,B34,B35,B38,B39,B4,B42,B43,B48,B51,B54,B59,B6,B61,B64,B68,B70,B73,B74,B77,B79,B8,B82,B88,B9,C1,C11,C14,C15,C17,C18,C25,C26,C27,C3,C30,C34,C35,C37,C39,C4,C42,C49,C51,C54,C58,C6,C60,C67,C69,C7,C72,C8,C84,D1,D4,D5,D7
Chr8:5641263 G A EMS_canonical_SNV CDS_variant 1 A15
Chr8:5641277 C T EMS_canonical_SNV CDS_variant 1 B36
Chr8:5641320 C T EMS_canonical_SNV CDS_variant 1 C31
Chr8:5641388 C T EMS_canonical_SNV CDS_variant 5 A1,A2,B26,B58,C10
Chr8:5641475 C T EMS_canonical_SNV CDS_variant 2 B131,C82
Chr8:5641499 G A EMS_canonical_SNV CDS_variant 2 C22,C65
Chr8:5641607 G A EMS_canonical_SNV CDS_variant 2 B58,C31
Chr8:5641676 G A EMS_canonical_SNV CDS_variant 3 B101,B24,B25
Chr8:5641762 C T EMS_canonical_SNV CDS_variant 2 B108,B13

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057926215.1
AGAAGAAAAGTGAAAAATAAGAAAATGAAAATAAATAGGTAGAGCGGAAGCAAGCAATATAGGTCTCTCACTCTAAAAGTTGGGAGAGAGAGAATCTGGTCGCCAGCGATGAAGTAGAGGGATCAAAGCTTTCCCTCAGGTCAAAGCTGGCATTTCTTGTTTAAAGCCCTTCTTCTCCTCTCCCACTCCTCTTCACTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTCAAATCGCCTCTCCTCGCCGTGAGTGAG...

CDS

1 records

下载 CDS FASTA
LOC131000345
ATGGTTGATTATTGCAATCCATCCATGGCTGTCGCATCTCCGTCTTTCGCCGGCGGAGAGAGGAAACACTGGTGGCTCACCAACAAAAAGATGGTGGATAGATACGTGAGGGAGGCCAGAATGTTGATTGCGACGCAGGAGCAGAGCGAGATTGCGGCGGCGTTGGGGCTCCTGGAGGCGGCGGTCGCGTTGGCGCCTCGCATGGAGGTTGCGCTCGAGCTGAAGGCGCGGTGTTTGATGCACCTCCGGCGCTTCAAGGA...

Protein

1 records

下载 Protein FASTA
XP_057782198.1
MVDYCNPSMAVASPSFAGGERKHWWLTNKKMVDRYVREARMLIATQEQSEIAAALGLLEAAVALAPRMEVALELKARCLMHLRRFKEVADMLQDYIPSLKMVASDDSSSSASSDNSSTQLSRERVKLLSSGGDSLSGDEPAFKCFSVSDLKKKVMAGLCKNVEKEGQWRYSVLGQACCHLGLMEEAMVLLQTGKRLATAAFRRESISLSDDIFSFNKFPRSGENLIGNQPQTPPKTESESISHLLCHIKLLIRRKTAAIA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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