Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G000772

染色体: Chr08 坐标: 5686469-5688000 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G000772
名称SmilChr08G000772
描述uncharacterized SmilChr08G000772
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向5686469 - 5688000 / -

ID 对照

NCBI Gene IDLOC131000352
GeneID131000352
locus_tag-
NCBI NameLOC131000352
原始查询LOC131000352

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述confidence=no_hit
产物confidence=no_hit
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131000352

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057782204.1
2 Cytoplasm 细胞质 0.80000 XP_057782204.1
3 Chromosome 染色体 0.00000 XP_057782204.1
4 Centromere 着丝粒 0.00000 XP_057782204.1
5 Chromatin 染色质 0.00000 XP_057782204.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:5686794 CA C 1bp_deletion frameshift_variant 50 A13,A23,A25,A9,B101,B105,B107,B108,B11,B110,B114,B117,B119,B12,B120,B123,B130,B131,B22,B26,B28,B29,B34,B37,B4,B45,B52,B57,B62,B68,B69,B70,B81,B94,C14,C19,C28,C30,C41,C44,C47,C53,C59,C6,C63,C67,C77,C83,D1,D7
Chr8:5686799 A ATC 2bp_insertion frameshift_variant 101 A1,A11,A13,A15,A19,A4,A5,A6,B1,B102,B113,B114,B115,B117,B118,B120,B127,B130,B131,B132,B134,B135,B136,B14,B140,B19,B2,B20,B26,B30,B32,B36,B38,B39,B41,B45,B47,B48,B50,B51,B52,B54,B55,B57,B59,B61,B71,B72,B77,B78,B79,B80,B81,B83,B85,B9,B91,B97,C10,C12,C14,C17,C26,C28,C3,C30,C31,C33,C34,C36,C39,C42,C45,C49,C5,C50,C51,C52,C57,C58,C6,C63,C64,C65,C66,C70,C74,C75,C76,C77,C78,C83,C84,C9,D10,D11,D3,D4,D6,D7,D8
Chr8:5686803 TG T 1bp_deletion frameshift_variant 165 A1,A11,A13,A15,A19,A20,A23,A25,A4,A5,A6,B1,B101,B102,B108,B11,B113,B114,B115,B117,B118,B119,B120,B122,B123,B127,B128,B129,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B140,B16,B17,B19,B2,B20,B21,B23,B26,B27,B29,B30,B31,B32,B35,B36,B38,B39,B40,B41,B45,B46,B47,B48,B50,B51,B52,B53,B54,B55,B57,B58,B59,B61,B65,B66,B68,B7,B70,B71,B72,B73,B76,B77,B78,B79,B80,B81,B83,B84,B85,B88,B9,B91,B92,B93,B97,B98,C10,C12,C14,C15,C17,C18,C20,C21,C25,C26,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C39,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C68,C70,C71,C73,C74,C75,C76,C77,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D6,D7,D8,D9
Chr8:5686806 AG A 1bp_deletion frameshift_variant 167 A1,A11,A13,A15,A19,A20,A23,A25,A4,A5,A6,B1,B101,B102,B108,B11,B113,B114,B115,B117,B118,B119,B120,B122,B123,B127,B128,B129,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B140,B16,B17,B19,B2,B20,B21,B23,B26,B27,B29,B30,B31,B32,B35,B36,B38,B39,B40,B41,B45,B46,B47,B48,B50,B51,B52,B53,B54,B55,B57,B58,B59,B61,B62,B65,B66,B68,B7,B70,B71,B72,B73,B76,B77,B78,B79,B80,B81,B83,B84,B85,B88,B9,B91,B92,B93,B97,B98,C1,C10,C12,C14,C15,C17,C18,C20,C21,C25,C26,C27,C28,C3,C30,C31,C32,C33,C34,C35,C36,C39,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C56,C57,C58,C59,C6,C61,C62,C63,C64,C65,C66,C68,C70,C71,C73,C74,C75,C76,C77,C78,C8,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D6,D7,D8,D9
Chr8:5686855 AT A 1bp_deletion frameshift_variant 1 B85
Chr8:5686855 AT A 1bp_deletion CDS_variant 1 B85
Chr8:5686927 G A EMS_canonical_SNV CDS_variant 1 C22
Chr8:5686935 G A EMS_canonical_SNV CDS_variant 5 B1,B35,B74,C25,D10
Chr8:5686968 GC G 1bp_deletion frameshift_variant 6 B9,C10,C14,C30,C34,C52
Chr8:5686971 A AT 1bp_insertion frameshift_variant 6 B9,C10,C14,C30,C34,C52
Chr8:5687003 CG C 1bp_deletion frameshift_variant 15 A11,A13,B117,B136,B38,B39,B4,B61,B81,B95,B98,C51,C52,C7,D3
Chr8:5687032 C T EMS_canonical_SNV CDS_variant 1 C82

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057926222.1
ATATATCAGATACGCACACTATATGACAATGCCAATACATCGCAATGACAATTGTAGCAGATTACGAACCTGGAACCATCGATCAATACATTGCGAAGTGGAAGCAAAAGGGTTATGATATCGATGACATTTCCATAGCCCCGGGGACTGAGGGCTGTCCTTTTCGGCTAGATATATACGCCTACAAGGAAGGCAGTCGTGACTACAATTATGTTATGTCACTGCAAGAAGGCATAGTTGACATAATGAATGCTGAGATA...
XM_057926221.1
ATATATCAGATACGCACACTATATGACAATGCCAATACATCGCAATGACAATTGTAGCAGATTACGAACCTGGAACCATCGATCAATACATTGCGAAGTGGAAGCAAAAGGGTTATGATATCGATGACATTTCCATAGCCCCGGGGACTGAGGGCTGTCCTTTTCGGCTAGATATATACGCCTACAAGGAAGGCAGTCGTGACTACAATTATGTTATGTCACTGCAAGAAGGCATAGTTGACATAATGAATGCTGAGGTT...

CDS

2 records

下载 CDS FASTA
LOC131000352
ATGACAATTGTAGCAGATTACGAACCTGGAACCATCGATCAATACATTGCGAAGTGGAAGCAAAAGGGTTATGATATCGATGACATTTCCATAGCCCCGGGGACTGAGGGCTGTCCTTTTCGGCTAGATATATACGCCTACAAGGAAGGCAGTCGTGACTACAATTATGTTATGTCACTGCAAGAAGGCATAGTTGACATAATGAATGCTGAGATACATAAGGAGAAGTACGAGGTGAAGGAACTTGTGACGAGGGTGCA...
LOC131000352
ATGACAATTGTAGCAGATTACGAACCTGGAACCATCGATCAATACATTGCGAAGTGGAAGCAAAAGGGTTATGATATCGATGACATTTCCATAGCCCCGGGGACTGAGGGCTGTCCTTTTCGGCTAGATATATACGCCTACAAGGAAGGCAGTCGTGACTACAATTATGTTATGTCACTGCAAGAAGGCATAGTTGACATAATGAATGCTGAGGTTGTATGCATACATATTTGTAATCTATACTCATTTCCACAAATATT...

Protein

2 records

下载 Protein FASTA
XP_057782204.1
MTIVADYEPGTIDQYIAKWKQKGYDIDDISIAPGTEGCPFRLDIYAYKEGSRDYNYVMSLQEGIVDIMNAEVVCIHICNLYSFPQIFMFFLMLIKIQIHKEKYEVKELVTRVHSWDDLPLDEEIQVLKFNVSEVHTNEVKTVEAALYDDGYSRYFDLKEWRFKVGSPETPPEIPYPRSPSPEPPRQEGPSIPMHYHLFKRDPHEFYPTCSMV
XP_057782205.1
MTIVADYEPGTIDQYIAKWKQKGYDIDDISIAPGTEGCPFRLDIYAYKEGSRDYNYVMSLQEGIVDIMNAEIHKEKYEVKELVTRVHSWDDLPLDEEIQVLKFNVSEVHTNEVKTVEAALYDDGYSRYFDLKEWRFKVGSPETPPEIPYPRSPSPEPPRQEGPSIPMHYHLFKRDPHEFYPTCSMV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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