当前解析结果
SmilChr08G000774| 统一新 Gene ID | SmilChr08G000774 |
|---|---|
| 名称 | SmilChr08G000774 |
| 描述 | DNA mismatch repair protein MSH6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5698233 - 5706331 / - |
| NCBI Gene ID | LOC131000354 |
|---|---|
| GeneID | 131000354 |
| locus_tag | - |
| NCBI Name | LOC131000354 |
| 原始查询 | LOC131000354 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA mismatch repair protein MSH6 |
| 产物 | DNA mismatch repair protein MSH6 |
| Arabidopsis | AT4G02070 (MSH6)MUTS homolog 6 [Source:NCBI gene (formerly Entrezgene);Acc:828147] identity=60.2; qcov=1.03; evalue=0; confidence=high |
| Rice | Os09g0407600 (OsMsh6)- identity=52.8; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006298 (mismatch repair); GO:0030983 (mismatched DNA binding); GO:0140664 (ATP-dependent DNA damage sensor activity) |
| KEGG | smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00488 (MutS_V); PF01624 (MutS_I); PF05190 (MutS_IV); PF05192 (MutS_III) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000354 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782207.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782207.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782207.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782207.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782207.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5698588 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B134,B29,C16,C30,C76 |
Chr8:5698590 |
A |
AG |
1bp_insertion | frameshift_variant | 78 | A13,A15,A16,A18,A24,A25,A5,B10,B104,B105,B108,B109,B11,B112,B115,B119,B12,B122,B126,B127,B128,B13,B130,B131,B135,B137,B14,B15,B18,B24,B26,B3,B32,B35,B38,B39,B44,B5,B61,B63,B66,B70,B72,B8,B80,B86,B87,B88,B90,B92,B94,B95,B97,B99,C1,C18,C22,C29,C30,C33,C43,C44,C52,C56,C60,C61,C65,C74,C78,C79,C8,C83,C87,C9,D10,D2,D6,D9 |
Chr8:5698593 |
TAG |
T |
2bp_deletion | frameshift_variant | 11 | B10,B102,B107,B11,B135,B64,B68,C38,C42,C52,C58 |
Chr8:5698634 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B4 |
Chr8:5698634 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B4 |
Chr8:5698648 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B110,C10 |
Chr8:5698755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B134,C20,C79,C80 |
Chr8:5698927 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,B48 |
Chr8:5699471 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B19,B9,C39 |
Chr8:5700094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B55,B65,C21,C36 |
Chr8:5701579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr8:5702753 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782207.1PF01624
MutS_I 341-456 aa
PF05192
MutS_III 669-985 aa
PF05190
MutS_IV 855-944 aa
PF00488
MutS_V 1047-1238 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782207.1 |
Pfam | PF01624 |
MutS_I | Domain | 341 | 456 | 1.1e-32 | 113.2 | MutS domain I |
XP_057782207.1 |
Pfam | PF05192 |
MutS_III | Domain | 669 | 985 | 1.1e-37 | 130.9 | MutS domain III |
XP_057782207.1 |
Pfam | PF05190 |
MutS_IV | Domain | 855 | 944 | 4.2e-14 | 53.3 | MutS family domain IV |
XP_057782207.1 |
Pfam | PF00488 |
MutS_V | Domain | 1047 | 1238 | 2.4e-67 | 227.3 | MutS domain V |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。