当前解析结果
SmilChr08G000795| 统一新 Gene ID | SmilChr08G000795 |
|---|---|
| 名称 | SmilChr08G000795 |
| 描述 | uncharacterized SmilChr08G000795 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5843295 - 5846858 / - |
| NCBI Gene ID | LOC131000379 |
|---|---|
| GeneID | 131000379 |
| locus_tag | - |
| NCBI Name | LOC131000379 |
| 原始查询 | LOC131000379 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heme binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825410]; symbol=AT3G62370; hit=AT3G62370; species=arabidopsis; confidence=high |
| 产物 | heme binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825410]; symbol=AT3G62370; hit=AT3G62370; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G62370 (AT3G62370)heme binding protein [Source:NCBI gene (formerly Entrezgene);Acc:825410] identity=60.8; qcov=0.978; evalue=1.74e-168; confidence=high |
| Rice | Os03g0309000- identity=61.6; qcov=0.912; evalue=1.22e-159; confidence=high |
| GO | GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF09459 (EB_dh) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000379 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057782235.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057782235.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057782235.1 |
| 4 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057782235.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057782235.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5843587 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr8:5843602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B18,C15,C81 |
Chr8:5843623 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,C15 |
Chr8:5843638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:5843733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B140 |
Chr8:5843773 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B135,C46 |
Chr8:5844455 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr8:5845385 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B37,B71,B74,C6,C73 |
Chr8:5845415 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,C81 |
Chr8:5846246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:5846529 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782235.1PF09459
EB_dh 57-298 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782235.1 |
Pfam | PF09459 |
EB_dh | Domain | 57 | 298 | 4.2e-33 | 116.2 | Ethylbenzene dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。