当前解析结果
SmilChr08G000805| 统一新 Gene ID | SmilChr08G000805 |
|---|---|
| 名称 | SmilChr08G000805 |
| 描述 | protein CYCLOPS-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 5927227 - 5929452 / - |
| NCBI Gene ID | LOC131000385 |
|---|---|
| GeneID | 131000385 |
| locus_tag | - |
| NCBI Name | LOC131000385 |
| 原始查询 | LOC131000385 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein CYCLOPS-like |
| 产物 | protein CYCLOPS-like |
| Arabidopsis | -- |
| Rice | Os06g0115600 (CYCLOPS)- identity=48.4; qcov=0.947; evalue=2.68e-23; confidence=medium |
| GO | GO:0005634 (nucleus); GO:0036377 (arbuscular mycorrhizal association); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000385 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782241.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057782241.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782241.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782241.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782241.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:5927493 |
AG |
A |
1bp_deletion | frameshift_variant | 52 | A10,A15,A16,A2,A5,B10,B11,B112,B118,B12,B126,B13,B136,B138,B14,B15,B26,B29,B40,B42,B43,B48,B49,B51,B53,B61,B68,B7,B70,B75,B77,B78,B79,B83,B93,B96,C12,C15,C23,C3,C30,C33,C41,C42,C54,C57,C58,C6,C65,C70,C82,D11 |
Chr8:5927504 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C21 |
Chr8:5927533 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,D6 |
Chr8:5927560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B107,B130 |
Chr8:5927565 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B107,B130 |
Chr8:5927574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,C71 |
Chr8:5927583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B31,B44,B91 |
Chr8:5927609 |
TTG |
T |
2bp_deletion | frameshift_variant | 5 | A16,B26,B61,B64,B8 |
Chr8:5927609 |
TTG |
T |
2bp_deletion | CDS_variant | 5 | A16,B26,B61,B64,B8 |
Chr8:5927615 |
G |
GAT |
2bp_insertion | frameshift_variant | 5 | A16,B26,B61,B64,B8 |
Chr8:5927615 |
G |
GAT |
2bp_insertion | CDS_variant | 5 | A16,B26,B61,B64,B8 |
Chr8:5927621 |
A |
AT |
1bp_insertion | frameshift_variant | 5 | A16,B26,B61,B64,B8 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
12 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。