Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004207

染色体: Chr01 坐标: 60509763-60514700 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004207
名称SmilChr01G004207
描述uncharacterized SmilChr01G004207
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向60509763 - 60514700 / +

ID 对照

NCBI Gene IDLOC131000406
GeneID131000406
locus_tag-
NCBI NameLOC131000406
原始查询LOC131000406

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826938]; symbol=AT4G13220; hit=AT4G13220; species=arabidopsis; confidence=medium
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826938]; symbol=AT4G13220; hit=AT4G13220; species=arabidopsis; confidence=medium
ArabidopsisAT4G13220 (AT4G13220)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:826938]
identity=47.8; qcov=0.682; evalue=7.25e-22; confidence=medium
RiceOs12g0276100
-
identity=56.7; qcov=0.508; evalue=8.7e-21; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131000406

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057782278.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057782278.1
3 Chloroplast thylakoid membrane 类囊体膜 1.00000 XP_057782278.1
4 Chloroplast membrane 叶绿体膜 0.80000 XP_057782286.1
5 Nucleus 细胞核 0.00000 XP_057782286.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:60510001 G A EMS_canonical_SNV CDS_variant 4 B28,B35,B5,C40
Chr1:60510004 G A EMS_canonical_SNV CDS_variant 1 B5
Chr1:60510062 G A EMS_canonical_SNV CDS_variant 4 B28,B35,B55,C40
Chr1:60510082 G A EMS_canonical_SNV CDS_variant 1 B73
Chr1:60510142 C T EMS_canonical_SNV CDS_variant 1 C2
Chr1:60512788 G A EMS_canonical_SNV CDS_variant 1 C2
Chr1:60512808 C T EMS_canonical_SNV CDS_variant 2 B27,C47
Chr1:60512968 G A EMS_canonical_SNV CDS_variant 1 B131
Chr1:60513003 C T EMS_canonical_SNV CDS_variant 2 B104,D11
Chr1:60513058 AC A 1bp_deletion frameshift_variant 2 B15,C77
Chr1:60513058 AC A 1bp_deletion CDS_variant 2 B15,C77
Chr1:60513115 AT A 1bp_deletion frameshift_variant 10 A15,A25,A8,B10,B117,B70,C27,C41,C49,C52

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057926295.1
TCGACTACCACAGTTCACCCATATTTTTATTTTTGTTTTAGCGAAATAGTTCACCCATTATATCACTTAATCTCCTTTTCTCTTTTCTCTTTTTTTGAGCAATAAAAACCGCTAAATTTTGCATAGAACACAATGGGAGAAATATAATTATCAACAGAAAATAGATATTCAAGCATGGCTTCTACTGGTATCGTGGTGTTACACAAGACCCTATTGCTTCCAATTTCGTCTCCTAAATGTTGCAAAAATCAGATTTCTCC...
XM_057926303.1
CCACAGTTCACCCATATTTTTATTTTTGTTTTAGCGAAATAGTTCACCCATTATATCACTTAATCTCCTTTTCTCTTTTCTCTTTTTTTGAGCAATAAAAACCGCTAAATTTTGCATAGAACACAATGGGAGAAATATAATTATCAACAGAAAATAGATATTCAAGCATGGCTTCTACTGGTATCGTGGTGTTACACAAGACCCTATTGCTTCCAATTTCGTCTCCTAAATGTTGCAAAAATCAGATTTCTCCACTCAAA...

CDS

3 records

下载 CDS FASTA
LOC131000406
ATGGCTTCTACTGGTATCGTGGTGTTACACAAGACCCTATTGCTTCCAATTTCGTCTCCTAAATGTTGCAAAAATCAGATTTCTCCACTCAAAACGTCCCAATTTCTTTCCTCAAATTCCCTTTCGGAGTTGAAGATGCAAATCCGAATTCCGTCCGTACACATCAAGCAGCTCAAGAATCACAGACTTCCAGTTATATCTGCTGCGCAATCCAATTTGTTCAAAGCTATTCTAACCATATGGAAGGTTGGCAAGGATGG...
LOC131000406
ATGGCTTCTACTGGTATCGTGGTGTTACACAAGACCCTATTGCTTCCAATTTCGTCTCCTAAATGTTGCAAAAATCAGATTTCTCCACTCAAAACGTCCCAATTTCTTTCCTCAAATTCCCTTTCGGAGTTGAAGATGCAAATCCGAATTCCGTCCGTACACATCAAGCAGCTCAAGAATCACAGACTTCCAGTTATATCTGCTGCGCAATCCAATTTGTTCAAAGCTATTCTAACCATATGGAAGGTTGGCAAGGATGG...

Protein

3 records

下载 Protein FASTA
XP_057782278.1
MASTGIVVLHKTLLLPISSPKCCKNQISPLKTSQFLSSNSLSELKMQIRIPSVHIKQLKNHRLPVISAAQSNLFKAILTIWKVGKDGVEAGTSFVPAAVPRPLARLSVTAVAVTLVLFVLKSFISTAVFALVHSYALFFILEDAKTKFKIAPNLPSTYPLMPCKIFIAYVGFELLIAITV
XP_057782286.1
MASTGIVVLHKTLLLPISSPKCCKNQISPLKTSQFLSSNSLSELKMQIRIPSVHIKQLKNHRLPVISAAQSNLFKAILTIWKVGKDGVEAGTSFVPAAVPRPLARLSVTAVAVTLVLFVLKSFISTAVFALAVMGLCYFTFIALNKDEAPKGGGGETASVDDSLEEARKIMEKYK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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