当前解析结果
SmilChr08G000862| 统一新 Gene ID | SmilChr08G000862 |
|---|---|
| 名称 | SmilChr08G000862 |
| 描述 | DNA mismatch repair protein PMS1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6381251 - 6387210 / - |
| NCBI Gene ID | LOC131000449 |
|---|---|
| GeneID | 131000449 |
| locus_tag | - |
| NCBI Name | LOC131000449 |
| 原始查询 | LOC131000449 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA mismatch repair protein PMS1 |
| 产物 | DNA mismatch repair protein PMS1 |
| Arabidopsis | AT4G02460 (PMS1)DNA mismatch repair protein [Source:NCBI gene (formerly Entrezgene);Acc:827997] identity=52.2; qcov=0.993; evalue=0; confidence=high |
| Rice | Os02g0592300 (OsPMS1)- identity=48.9; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0006298 (mismatch repair); GO:0016887 (ATP hydrolysis activity); GO:0030983 (mismatched DNA binding); GO:0032389 (MutLalpha complex); GO:0140664 (ATP-dependent DNA damage sensor activity) |
| KEGG | smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01119 (DNA_mis_repair); PF08676 (MutL_C); PF13589 (HATPase_c_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000449 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782342.1 |
| 2 | Chromosome | 染色体 | 0.60000 | XP_057782342.1 |
| 3 | Nucleoplasm | 核质 | 0.40000 | XP_057782342.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782342.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782342.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6381905 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C78,C9 |
Chr8:6381941 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,C15 |
Chr8:6381950 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,C15 |
Chr8:6383666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:6383731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C18,C78,C9 |
Chr8:6383957 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B4,B53,C14 |
Chr8:6383958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B24,B36 |
Chr8:6384064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B95,C71,C80 |
Chr8:6384495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C23 |
Chr8:6384585 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:6384653 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6384772 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782342.1PF13589
HATPase_c_3 31-136 aa
PF01119
DNA_mis_repair 224-342 aa
PF08676
MutL_C 728-884 aa
XP_057782344.1PF13589
HATPase_c_3 31-136 aa
PF01119
DNA_mis_repair 224-342 aa
PF08676
MutL_C 728-824 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782342.1 |
Pfam | PF13589 |
HATPase_c_3 | Domain | 31 | 136 | 8.4e-17 | 62.2 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057782342.1 |
Pfam | PF01119 |
DNA_mis_repair | Family | 224 | 342 | 9e-25 | 87.3 | DNA mismatch repair protein, C-terminal domain |
XP_057782342.1 |
Pfam | PF08676 |
MutL_C | Domain | 728 | 884 | 1e-25 | 90.8 | MutL C terminal dimerisation domain |
XP_057782344.1 |
Pfam | PF13589 |
HATPase_c_3 | Domain | 31 | 136 | 6.1e-17 | 62.6 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase |
XP_057782344.1 |
Pfam | PF01119 |
DNA_mis_repair | Family | 224 | 342 | 7e-25 | 87.7 | DNA mismatch repair protein, C-terminal domain |
XP_057782344.1 |
Pfam | PF08676 |
MutL_C | Domain | 728 | 824 | 8e-21 | 74.9 | MutL C terminal dimerisation domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。