Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000864`

染色体: Chr08 坐标: 6393585-6403061 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000864`
名称	SmilChr08G000864
描述	uncharacterized SmilChr08G000864
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6393585 - 6403061 / `-`

ID 对照

NCBI Gene ID	`LOC131000451`
GeneID	`131000451`
locus_tag	`-`
NCBI Name	`LOC131000451`
原始查询	`LOC131000451`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979]; symbol=AT4G02480; hit=AT4G02480; species=arabidopsis; confidence=high
产物	AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979]; symbol=AT4G02480; hit=AT4G02480; species=arabidopsis; confidence=high
Arabidopsis	`AT4G02480` (AT4G02480) AAA-type ATPase family protein [Source:NCBI gene (formerly Entrezgene);Acc:827979] identity=60.8; qcov=1.05; evalue=0; confidence=high
Rice	`Os03g0344700` - identity=58.9; qcov=0.673; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0005741 (mitochondrial outer membrane); GO:0016887 (ATP hydrolysis activity)
KEGG	-
Pfam	PF00004 (AAA); PF17862 (AAA_lid_3); PF24933 (DUF7751)
InterPro	-
eggNOG	-
NR	GeneID:131000451

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782350.1`
2	Cytosol	细胞质基质	0.80000	`XP_057782349.1`
3	Cytoplasm	细胞质	0.40000	`XP_057782349.1`
4	Chromosome	染色体	0.00000	`XP_057782349.1`
5	Centromere	着丝粒	0.00000	`XP_057782349.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6393856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B136,B17,D3
`Chr8:6393866`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:6393929`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr8:6393935`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B30,B54,B61,C60
`Chr8:6394064`	`GA`	`G`	1bp_deletion	frameshift_variant	21	B10,B118,B122,B136,B17,B20,B4,B42,B43,B46,B47,B51,C16,C20,C35,C36,C39,C55,C63,C8,D3
`Chr8:6394099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A13,B63,D2
`Chr8:6394136`	`C`	`T`	EMS_canonical_SNV	stop_gained	12	B122,B20,B4,B42,B43,B47,C20,C35,C36,C39,C55,C63
`Chr8:6394239`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C14,C15
`Chr8:6395147`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B85
`Chr8:6395722`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B99,C87
`Chr8:6397665`	`T`	`TGA`	2bp_insertion	frameshift_variant	2	B77,C80
`Chr8:6397665`	`T`	`TGA`	2bp_insertion	CDS_variant	2	B77,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782349.1

1225 aa

612

1225

DUF7751

AAA

AAA_lid_3

PF24933 DUF7751 818-878 aa PF00004 AAA 957-1087 aa PF17862 AAA_lid_3 1110-1146 aa

XP_057782350.1

1221 aa

610

1221

DUF7751

AAA

AAA_lid_3

PF24933 DUF7751 818-878 aa PF00004 AAA 957-1087 aa PF17862 AAA_lid_3 1110-1146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782349.1`	Pfam	`PF24933`	DUF7751	Domain	818	878	3.1e-26	92.2	Domain of unknown function (DUF7751)
`XP_057782349.1`	Pfam	`PF00004`	AAA	Domain	957	1087	1.1e-38	133.4	ATPase family associated with various cellular activities (AAA)
`XP_057782349.1`	Pfam	`PF17862`	AAA_lid_3	Domain	1110	1146	1.4e-13	50.8	AAA+ lid domain
`XP_057782350.1`	Pfam	`PF24933`	DUF7751	Domain	818	878	3.1e-26	92.3	Domain of unknown function (DUF7751)
`XP_057782350.1`	Pfam	`PF00004`	AAA	Domain	957	1087	1.1e-38	133.4	ATPase family associated with various cellular activities (AAA)
`XP_057782350.1`	Pfam	`PF17862`	AAA_lid_3	Domain	1110	1146	1.4e-13	50.8	AAA+ lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926367.1
TTCTTCTCTCACCTTCTCACTTAGAGCTGTGTATTAAAATTATATATAAATACAAATTATATATACACATATGCACACAACAATCCATCTCTTTAAACATCCCTTGATTTTCAGTCGGAAAATCAAATTTTGGGATCGAAATTCAGGTTCTTTTTTGGTCAATTTAGGTTATTAGATCAGAAAAAATGGTGGAAACGCGGCGGAGTTCTTCTTCCTCTAAGCGCCCCCTTTCCTCACCTTCATCTTCCATGCCAAATCGC...

XM_057926366.1
CTTCTCACTTAGAGCTGTGTATTAAAATTATATATAAATACAAATTATATATACACATATGCACACAACAATCCATCTCTTTAAACATCCCTTGATTTTCAGTCGGAAAATCAAATTTTGGGATCGAAATTCAGGTTCTTTTTTGGTCAATTTAGGTTATTAGATCAGAAAAAATGGTGGAAACGCGGCGGAGTTCTTCTTCCTCTAAGCGCCCCCTTTCCTCACCTTCATCTTCCATGCCAAATCGCAAACGATCCAAG...

CDS

2 records

下载 CDS FASTA

LOC131000451
ATGGTGGAAACGCGGCGGAGTTCTTCTTCCTCTAAGCGCCCCCTTTCCTCACCTTCATCTTCCATGCCAAATCGCAAACGATCCAAGGGAGGAGCGGATGCGTCCTCTTCTTCTCTGAATGATTCGCCGTCTTCCGAGGAAGTCGTTGGCGCGGTAGCGTCGAAGGAATTAGAGGCCGGATCGGCTGATCTAGATAACGGTGGCGCCGAGAAGCAATCGGAGGATGTGGCGGCGGACAAATCGCCGGAGGCCGTGGCGGC...

Protein

2 records

下载 Protein FASTA

XP_057782349.1
MVETRRSSSSSKRPLSSPSSSMPNRKRSKGGADASSSSLNDSPSSEEVVGAVASKELEAGSADLDNGGAEKQSEDVAADKSPEAVAAGDSITDVEKGKSSGPPVNRGKKRQLKANAGVAWGKLISQCPPNPHVVLHRPTFTVGQGRQCDLWVRDPTISKSLCKLKRMESEEGESLTLLEITGKKGAVQVNGKNYYKDTTIPINAGDEVVFSSSDKRSYVFQQLTDESAPMVDDPASVSMLEAHDGPIKGLHIEARSGDPS...

XP_057782350.1
MVETRRSSSSSKRPLSSPSSSMPNRKRSKGGADASSSSLNDSPSSEEVVGAVASKELEAGSADLDNGGAEKQSEDVAADKSPEAVAAGDSITDVEKGKSSGPPVNRGKKRQLKANAGVAWGKLISQCPPNPHVVLHRPTFTVGQGRQCDLWVRDPTISKSLCKLKRMESEEGESLTLLEITGKKGAVQVNGKNYYKDTTIPINAGDEVVFSSSDKRSYVFQQLTDESAPMVDDPASVSMLEAHDGPIKGLHIEARSGDPS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器