当前解析结果
SmilChr08G000883| 统一新 Gene ID | SmilChr08G000883 |
|---|---|
| 名称 | SmilChr08G000883 |
| 描述 | uncharacterized SmilChr08G000883 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6527828 - 6532813 / - |
| NCBI Gene ID | LOC131000470 |
|---|---|
| GeneID | 131000470 |
| locus_tag | - |
| NCBI Name | LOC131000470 |
| 原始查询 | LOC131000470 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinetochore protein [Source:NCBI gene (formerly Entrezgene);Acc:839363]; symbol=AT1G02960; hit=AT1G02960; species=arabidopsis; confidence=low |
| 产物 | kinetochore protein [Source:NCBI gene (formerly Entrezgene);Acc:839363]; symbol=AT1G02960; hit=AT1G02960; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G02960 (AT1G02960)kinetochore protein [Source:NCBI gene (formerly Entrezgene);Acc:839363] identity=30.3; qcov=1.09; evalue=4.49e-27; confidence=low |
| Rice | -- |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000470 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782367.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057782367.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057782371.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782367.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782367.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6528595 |
C |
T |
EMS_canonical_SNV | stop_gained | 60 | A15,A16,A22,A23,B102,B104,B105,B107,B108,B11,B114,B115,B123,B125,B135,B137,B16,B17,B29,B30,B34,B38,B41,B45,B53,B55,B56,B61,B64,B66,B68,B69,B8,B82,B89,B96,B99,C2,C27,C33,C34,C42,C49,C57,C6,C60,C62,C71,C78,C79,C80,C83,C84,C85,C86,C87,C9,D10,D7,D8 |
Chr8:6528940 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B17 |
Chr8:6528940 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B17 |
Chr8:6529357 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B2,B29,B61,C74 |
Chr8:6529514 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:6529810 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B100 |
Chr8:6530127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr8:6530223 |
ATC |
A |
2bp_deletion | frameshift_variant | 1 | B14 |
Chr8:6530223 |
ATC |
A |
2bp_deletion | CDS_variant | 1 | B14 |
Chr8:6530914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B134,D4 |
Chr8:6530992 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B37,C16,C40 |
Chr8:6532425 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C78,C9 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
9 records
下载 cDNA FASTA7 records
下载 CDS FASTA7 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。