Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000894`

染色体: Chr08 坐标: 6630555-6633482 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000894`
名称	SmilChr08G000894
描述	uncharacterized SmilChr08G000894
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6630555 - 6633482 / `-`

ID 对照

NCBI Gene ID	`LOC131000483`
GeneID	`131000483`
locus_tag	`-`
NCBI Name	`LOC131000483`
原始查询	`LOC131000483`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=medium
产物	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G07900` (AT5G07900) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684] identity=38.8; qcov=0.895; evalue=1.35e-79; confidence=medium
Rice	`Os07g0423000` - identity=33.2; qcov=0.852; evalue=8.82e-50; confidence=low
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization)
KEGG	-
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:131000483

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782385.1`
2	Nucleus	细胞核	0.00000	`XP_057782385.1`
3	Chromosome	染色体	0.00000	`XP_057782385.1`
4	Centromere	着丝粒	0.00000	`XP_057782385.1`
5	Chromatin	染色质	0.00000	`XP_057782385.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6632247`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr8:6632450`	`G`	`A`	EMS_canonical_SNV	stop_gained	4	A24,A5,B45,B53
`Chr8:6632450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A24,A5,B45,B53
`Chr8:6632455`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B11
`Chr8:6632455`	`AG`	`A`	1bp_deletion	CDS_variant	1	B11
`Chr8:6632517`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24
`Chr8:6632589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr8:6632621`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B60,B87,C38
`Chr8:6632622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,A4
`Chr8:6632630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B128,B133,C11,C69,C76
`Chr8:6632657`	`G`	`A`	EMS_canonical_SNV	stop_gained	6	B128,B133,C11,C21,C69,C76
`Chr8:6632719`	`C`	`CCT`	2bp_insertion	frameshift_variant	4	B60,B87,B99,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782385.1

392 aa

196

392

mTERF

PF02536 mTERF 89-243 aa PF02536 mTERF 256-363 aa

XP_057782386.1

392 aa

196

392

mTERF

PF02536 mTERF 89-243 aa PF02536 mTERF 256-363 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782385.1`	Pfam	`PF02536`	mTERF	Family	89	243	4.1e-42	144.9	mTERF
`XP_057782385.1`	Pfam	`PF02536`	mTERF	Family	256	363	4.1e-42	144.9	mTERF
`XP_057782386.1`	Pfam	`PF02536`	mTERF	Family	89	243	4.1e-42	144.9	mTERF
`XP_057782386.1`	Pfam	`PF02536`	mTERF	Family	256	363	4.1e-42	144.9	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009093746.1
CAGCACTTTTGATTTTCCATGATTATAAATTATCAAGTGATTCAAATGTTTGCAATTATTCATTGCAGCAGGCTGATTAGGGTTCCGACGAGAGATGCCATTAACGTCGCCCCACAATTTGTCGCGCATTTCTCCTCTCGAAAACTACCTTCAGATTTCAGCCGCGGCGACGCCACTTTCACCATCAGTTACCTCACAAATTCATGTGGATTGTCGTTGAAAGACGCCTTCTCCATATCCGCGAAATTGTGCGTCAAATC...

XM_057926403.1
GACCTAACCTAACTAATCATCCGATGTTACAAAGTTCTTCAAATAAAGTTAATTAGATATTGATATTAATAAGCTCATTCTAATTAAAATATTTGTTGAGTTGAAATTTAATAAGCTTAGAGGTCGACCGATTTGCAGCACTTTTGATTTTCCATGATTATAAATTATCAAGTGATTCAAATGTTTGCAATTATTCATTGCAGCAGGCTGATTAGGGTTCCGACGAGAGATGCCATTAACGTCGCCCCACAATTTGTCGC...

CDS

2 records

下载 CDS FASTA

LOC131000483
ATGATTATAAATTATCAAGTGATTCAAATGTTTGCAATTATTCATTGCAGCAGGCTGATTAGGGTTCCGACGAGAGATGCCATTAACGTCGCCCCACAATTTGTCGCGCATTTCTCCTCTCGAAAACTACCTTCAGATTTCAGCCGCGGCGACGCCACTTTCACCATCAGTTACCTCACAAATTCATGTGGATTGTCGTTGAAAGACGCCTTCTCCATATCCGCGAAATTGTGCGTCAAATCGCGGGAGAATTCAGATGC...

Protein

2 records

下载 Protein FASTA

XP_057782385.1
MIINYQVIQMFAIIHCSRLIRVPTRDAINVAPQFVAHFSSRKLPSDFSRGDATFTISYLTNSCGLSLKDAFSISAKLCVKSRENSDAILQLLKRYGFTNAQISRLVRKWPGVLQSSADKTLSPKLEFFRSIGVPPAALPQKLSEYPFLLRRSFDNYFTPWYNYLKSIVQSDKNVVAVFLSSPRAFTHGWPERIPSNIGILRERGVPESSITSLIVNKPSMMILKQDKFGACVDRAAELGLAPSKVVFVRALQVFGRLSES...

XP_057782386.1
MIINYQVIQMFAIIHCSRLIRVPTRDAINVAPQFVAHFSSRKLPSDFSRGDATFTISYLTNSCGLSLKDAFSISAKLCVKSRENSDAILQLLKRYGFTNAQISRLVRKWPGVLQSSADKTLSPKLEFFRSIGVPPAALPQKLSEYPFLLRRSFDNYFTPWYNYLKSIVQSDKNVVAVFLSSPRAFTHGWPERIPSNIGILRERGVPESSITSLIVNKPSMMILKQDKFGACVDRAAELGLAPSKVVFVRALQVFGRLSES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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