当前解析结果
SmilChr08G000910| 统一新 Gene ID | SmilChr08G000910 |
|---|---|
| 名称 | SmilChr08G000910 |
| 描述 | E3 ubiquitin-protein ligase MIEL1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6721203 - 6725136 / + |
| NCBI Gene ID | LOC131000496 |
|---|---|
| GeneID | 131000496 |
| locus_tag | - |
| NCBI Name | LOC131000496 |
| 原始查询 | LOC131000496 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase MIEL1-like |
| 产物 | E3 ubiquitin-protein ligase MIEL1-like |
| Arabidopsis | AT5G18650 (AT5G18650)CHY-type/CTCHY-type/RING-type Zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:831983] identity=69.2; qcov=0.902; evalue=6.47e-118; confidence=high |
| Rice | Os12g0538500- identity=61.4; qcov=0.953; evalue=4.95e-106; confidence=high |
| GO | GO:0005634 (nucleus); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00097 (zf-C3HC4); PF05495 (zf-CHY); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF14599 (zinc_ribbon_6); PF14634 (zf-RING_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000496 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782401.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057782405.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782401.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782401.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782401.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6721882 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,B67,C31 |
Chr8:6722104 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B5,B66,B8 |
Chr8:6722377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr8:6723202 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,B132 |
Chr8:6724721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:6724762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr8:6724769 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B10,B118,B139,B44,C14 |
Chr8:6724778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,D8 |
Chr8:6724790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B50,C54,C74,D3 |
Chr8:6724813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782401.1PF05495
zf-CHY 20-93 aa
PF13639
zf-RING_2 153-197 aa
PF14634
zf-RING_5 154-199 aa
PF00097
zf-C3HC4 155-197 aa
PF13923
zf-C3HC4_2 155-197 aa
PF14599
zinc_ribbon_6 202-259 aa
XP_057782402.1PF05495
zf-CHY 20-93 aa
PF13639
zf-RING_2 153-197 aa
PF14634
zf-RING_5 154-199 aa
PF00097
zf-C3HC4 155-197 aa
PF13923
zf-C3HC4_2 155-197 aa
PF14599
zinc_ribbon_6 202-259 aa
XP_057782405.1PF05495
zf-CHY 20-93 aa
PF13639
zf-RING_2 153-197 aa
PF14634
zf-RING_5 154-199 aa
PF00097
zf-C3HC4 155-197 aa
PF13923
zf-C3HC4_2 155-197 aa
XP_057782406.1PF05495
zf-CHY 20-93 aa
PF13639
zf-RING_2 153-197 aa
PF14634
zf-RING_5 154-199 aa
PF00097
zf-C3HC4 155-197 aa
PF13923
zf-C3HC4_2 155-197 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782401.1 |
Pfam | PF05495 |
zf-CHY | Domain | 20 | 93 | 8.6e-20 | 71.7 | CHY zinc finger |
XP_057782401.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 153 | 197 | 3.2e-09 | 37.6 | Ring finger domain |
XP_057782401.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 154 | 199 | 4.7e-08 | 33.6 | zinc-RING finger domain |
XP_057782401.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 155 | 197 | 8.8e-07 | 29.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057782401.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 155 | 197 | 7.4e-07 | 29.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057782401.1 |
Pfam | PF14599 |
zinc_ribbon_6 | Domain | 202 | 259 | 6.5e-23 | 81.2 | Zinc-ribbon |
XP_057782402.1 |
Pfam | PF05495 |
zf-CHY | Domain | 20 | 93 | 8.6e-20 | 71.7 | CHY zinc finger |
XP_057782402.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 153 | 197 | 3.2e-09 | 37.6 | Ring finger domain |
XP_057782402.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 154 | 199 | 4.7e-08 | 33.6 | zinc-RING finger domain |
XP_057782402.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 155 | 197 | 8.8e-07 | 29.4 | Zinc finger, C3HC4 type (RING finger) |
XP_057782402.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 155 | 197 | 7.4e-07 | 29.6 | Zinc finger, C3HC4 type (RING finger) |
XP_057782402.1 |
Pfam | PF14599 |
zinc_ribbon_6 | Domain | 202 | 259 | 6.5e-23 | 81.2 | Zinc-ribbon |
XP_057782405.1 |
Pfam | PF05495 |
zf-CHY | Domain | 20 | 93 | 7.9e-20 | 71.8 | CHY zinc finger |
XP_057782405.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 153 | 197 | 3e-09 | 37.7 | Ring finger domain |
XP_057782405.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 154 | 199 | 4.4e-08 | 33.7 | zinc-RING finger domain |
XP_057782405.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 155 | 197 | 9.6e-07 | 29.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057782405.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 155 | 197 | 6.9e-07 | 29.7 | Zinc finger, C3HC4 type (RING finger) |
XP_057782406.1 |
Pfam | PF05495 |
zf-CHY | Domain | 20 | 93 | 6.6e-20 | 72.0 | CHY zinc finger |
XP_057782406.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 153 | 197 | 2.6e-09 | 37.9 | Ring finger domain |
XP_057782406.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 154 | 199 | 3.8e-08 | 33.9 | zinc-RING finger domain |
XP_057782406.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 155 | 197 | 9.3e-07 | 29.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057782406.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 155 | 197 | 6e-07 | 29.9 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。