Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000920`

染色体: Chr08 坐标: 6795242-6797930 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000920`
名称	SmilChr08G000920
描述	probable indole-3-pyruvate monooxygenase YUCCA10
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	6795242 - 6797930 / `+`

ID 对照

NCBI Gene ID	`LOC131000506`
GeneID	`131000506`
locus_tag	`-`
NCBI Name	`LOC131000506`
原始查询	`LOC131000506`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable indole-3-pyruvate monooxygenase YUCCA10
产物	probable indole-3-pyruvate monooxygenase YUCCA10
Arabidopsis	`AT1G48910` (YUC10) Flavin-containing monooxygenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:841313] identity=47.5; qcov=0.899; evalue=6.83e-113; confidence=high
Rice	`Os12g0189500` (OsYUCCA11) - identity=47.5; qcov=0.905; evalue=8.89e-111; confidence=high
GO	GO:0004499 (N,N-dimethylaniline monooxygenase activity); GO:0050660 (flavin adenine dinucleotide binding); GO:0050661 (NADP binding)
KEGG	smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00070 (Pyr_redox); PF00743 (FMO-like); PF07992 (Pyr_redox_2); PF13434 (Lys_Orn_oxgnase); PF13738 (Pyr_redox_3)
InterPro	-
eggNOG	-
NR	GeneID:131000506

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057782426.1`
2	Lipid droplet	脂滴	0.60000	`XP_057782426.1`
3	Cytosol	细胞质基质	0.20000	`XP_057782425.1`
4	Peroxisome	过氧化物酶体	0.20000	`XP_057782425.1`
5	Nucleus	细胞核	0.00000	`XP_057782425.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:6795526`	`CG`	`C`	1bp_deletion	frameshift_variant	1	B8
`Chr8:6795526`	`CG`	`C`	1bp_deletion	CDS_variant	1	B8
`Chr8:6795907`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr8:6796075`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C12,C65
`Chr8:6796077`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:6796243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B113,B37,C44
`Chr8:6796330`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B37
`Chr8:6796330`	`TA`	`T`	1bp_deletion	CDS_variant	1	B37
`Chr8:6797540`	`A`	`AAT`	2bp_insertion	stop_gained,frameshift_variant	2	A3,C42
`Chr8:6797540`	`A`	`AAT`	2bp_insertion	CDS_variant	2	A3,C42
`Chr8:6797571`	`CA`	`C`	1bp_deletion	frameshift_variant	2	A3,C42
`Chr8:6797571`	`CA`	`C`	1bp_deletion	CDS_variant	2	A3,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782425.1

380 aa

190

380

Pyr_redox_2

FMO-like

Pyr_redox_3

Lys_Orn_oxgnase

Pyr_redox

PF07992 Pyr_redox_2 8-206 aa PF00743 FMO-like 8-315 aa PF13738 Pyr_redox_3 10-203 aa PF13434 Lys_Orn_oxgnase 75-199 aa PF00070 Pyr_redox 173-203 aa

XP_057782426.1

358 aa

179

358

Pyr_redox_2

FMO-like

Pyr_redox_3

Lys_Orn_oxgnase

Pyr_redox

PF07992 Pyr_redox_2 8-206 aa PF00743 FMO-like 8-313 aa PF13738 Pyr_redox_3 10-203 aa PF13434 Lys_Orn_oxgnase 75-199 aa PF00070 Pyr_redox 173-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782425.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	8	206	2.3e-17	64.1	Pyridine nucleotide-disulphide oxidoreductase
`XP_057782425.1`	Pfam	`PF00743`	FMO-like	Family	8	315	3.1e-25	89.3	Flavin-binding monooxygenase-like
`XP_057782425.1`	Pfam	`PF13738`	Pyr_redox_3	Family	10	203	5.7e-24	85.6	Pyridine nucleotide-disulphide oxidoreductase
`XP_057782425.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	75	199	6.2e-13	49.3	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057782425.1`	Pfam	`PF00070`	Pyr_redox	Domain	173	203	9.4e-09	36.4	Pyridine nucleotide-disulphide oxidoreductase
`XP_057782426.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	8	206	1.9e-17	64.4	Pyridine nucleotide-disulphide oxidoreductase
`XP_057782426.1`	Pfam	`PF00743`	FMO-like	Family	8	313	4e-25	89.0	Flavin-binding monooxygenase-like
`XP_057782426.1`	Pfam	`PF13738`	Pyr_redox_3	Family	10	203	5.9e-23	82.3	Pyridine nucleotide-disulphide oxidoreductase
`XP_057782426.1`	Pfam	`PF13434`	Lys_Orn_oxgnase	Family	75	199	5e-13	49.6	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
`XP_057782426.1`	Pfam	`PF00070`	Pyr_redox	Domain	173	203	8.2e-09	36.6	Pyridine nucleotide-disulphide oxidoreductase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926442.1
AACAGCACGCAGATGAGATTACTACCTACACAAAAAGTGAAAAACTACACTGCACTGCAAGCATGTGGGATTGAATTTGAACCCAACACGAGGAGACATAGAAAATATTATTAGCTTTTTTTTTGTTTTTTTTGAGGGCAGATATTATTAGCATTAACGAAATCCGGTATATATAGATCATCTTCCCCCACAACACCTATCGATCTACCCATTTTCTGTGCGACCAACTACACTAGCTTAAATCTTTTGATGGGCGAAGG...

XM_057926443.1
AACAGCACGCAGATGAGATTACTACCTACACAAAAAGTGAAAAACTACACTGCACTGCAAGCATGTGGGATTGAATTTGAACCCAACACGAGGAGACATAGAAAATATTATTAGCTTTTTTTTTGTTTTTTTTGAGGGCAGATATTATTAGCATTAACGAAATCCGGTATATATAGATCATCTTCCCCCACAACACCTATCGATCTACCCATTTTCTGTGCGACCAACTACACTAGCTTAAATCTTTTGATGGGCGAAGG...

CDS

2 records

下载 CDS FASTA

LOC131000506
ATGGGCGAAGGCGAAGCGGCGGTGACTATCGTGGGCGGCGGGCCGTCGGGGGTGGCGACGGCTGCGTGCCTGGGGCAGCTGTCGATCCCCTACACCCTCTTAGAGAGAGAAGAGTGCTTGGCGTCTCTGTGGCAGAAGCACACATACGAGCGCGTCCACCTCCACCTCCCCAAACAATTCTGCCACCTCCCCCTCATGCCCATCCCCGCCGCCTACCCCACCTACCTCTCGCGCCACCACTTCCTCCGCTACATAAACGA...

Protein

2 records

下载 Protein FASTA

XP_057782425.1
MGEGEAAVTIVGGGPSGVATAACLGQLSIPYTLLEREECLASLWQKHTYERVHLHLPKQFCHLPLMPIPAAYPTYLSRHHFLRYINDYASRFNVRPVYLRSVEAAAYDGEWRIQARNLDSGQVEEYRSRFLVVATGEACDARMPQIQGLESFAGELLHSTTYTNGQRFAGKEVLVVGSGNSGMEIALDLADYGAKTSIVIRSPIHILSRTMTYMSLVVARYLPMKWVNSVATLMSKIVYGDLTKYGIQRSKQAPFALKET...

XP_057782426.1
MGEGEAAVTIVGGGPSGVATAACLGQLSIPYTLLEREECLASLWQKHTYERVHLHLPKQFCHLPLMPIPAAYPTYLSRHHFLRYINDYASRFNVRPVYLRSVEAAAYDGEWRIQARNLDSGQVEEYRSRFLVVATGEACDARMPQIQGLESFAGELLHSTTYTNGQRFAGKEVLVVGSGNSGMEIALDLADYGAKTSIVIRSPIHILSRTMTYMSLVVARYLPMKWVNSVATLMSKIVYGDLTKYGIQRSKQAPFALKET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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