Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000951`

染色体: Chr08 坐标: 7090482-7101993 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000951`
名称	SmilChr08G000951
描述	piezo-type mechanosensitive ion channel homolog
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7090482 - 7101993 / `-`

ID 对照

NCBI Gene ID	`LOC131000514`
GeneID	`131000514`
locus_tag	`-`
NCBI Name	`LOC131000514`
原始查询	`LOC131000514`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	piezo-type mechanosensitive ion channel homolog
产物	piezo-type mechanosensitive ion channel homolog
Arabidopsis	`AT2G48060` (AT2G48060) piezo-type mechanosensitive ion channel component [Source:NCBI gene (formerly Entrezgene);Acc:819418] identity=65.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0388500` - identity=65.5; qcov=0.12; evalue=1.52e-106; confidence=weak
GO	-
KEGG	-
Pfam	PF12166 (Piezo_cap); PF23188 (THU_Piezo1); PF24874 (Piezo_THU9_anchor); PF25288 (PIEZO)
InterPro	-
eggNOG	-
NR	GeneID:131000514

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057782442.1`
2	Golgi apparatus	高尔基体	0.40000	`XP_057782442.1`
3	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057782443.1`
4	Endosome membrane	内体膜	0.20000	`XP_057782443.1`
5	Endosome	内体	0.20000	`XP_057782444.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7090787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:7091247`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr8:7091452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B33,B67,B76
`Chr8:7091764`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr8:7092826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr8:7093819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:7094353`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:7094885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr8:7095991`	`TAC`	`T`	2bp_deletion	frameshift_variant	1	B38
`Chr8:7095991`	`TAC`	`T`	2bp_deletion	CDS_variant	1	B38
`Chr8:7096340`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr8:7096824`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782442.1

2482 aa

1241

2482

PIEZO

THU_Piezo1

Piezo_THU9_anchor

Piezo_cap

PF25288 PIEZO 484-613 aa PF23188 THU_Piezo1 1628-1730 aa PF24874 Piezo_THU9_anchor 1938-2176 aa PF12166 Piezo_cap 2204-2481 aa

XP_057782443.1

2240 aa

1120

2240

PIEZO

THU_Piezo1

Piezo_THU9_anchor

Piezo_cap

PF25288 PIEZO 242-371 aa PF23188 THU_Piezo1 1386-1488 aa PF24874 Piezo_THU9_anchor 1696-1934 aa PF12166 Piezo_cap 1962-2239 aa

XP_057782444.1

2195 aa

1098

2195

PIEZO

THU_Piezo1

Piezo_THU9_anchor

Piezo_cap

PF25288 PIEZO 197-326 aa PF23188 THU_Piezo1 1341-1443 aa PF24874 Piezo_THU9_anchor 1651-1889 aa PF12166 Piezo_cap 1917-2194 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782442.1`	Pfam	`PF25288`	PIEZO	Domain	484	613	1.5e-60	203.8	Piezo-type mechanosensitive ion channel homolog domain
`XP_057782442.1`	Pfam	`PF23188`	THU_Piezo1	Domain	1628	1730	1.2e-15	58.4	Piezo1-like, transmembrane helical unit
`XP_057782442.1`	Pfam	`PF24874`	Piezo_THU9_anchor	Domain	1938	2176	8.2e-69	232.3	Piezo, THU9 and anchor domain
`XP_057782442.1`	Pfam	`PF12166`	Piezo_cap	Domain	2204	2481	2.5e-76	257.9	Piezo non-specific cation channel, cap domain
`XP_057782443.1`	Pfam	`PF25288`	PIEZO	Domain	242	371	1.4e-60	204.0	Piezo-type mechanosensitive ion channel homolog domain
`XP_057782443.1`	Pfam	`PF23188`	THU_Piezo1	Domain	1386	1488	1e-15	58.6	Piezo1-like, transmembrane helical unit
`XP_057782443.1`	Pfam	`PF24874`	Piezo_THU9_anchor	Domain	1696	1934	4.3e-68	229.9	Piezo, THU9 and anchor domain
`XP_057782443.1`	Pfam	`PF12166`	Piezo_cap	Domain	1962	2239	2.1e-76	258.1	Piezo non-specific cation channel, cap domain
`XP_057782444.1`	Pfam	`PF25288`	PIEZO	Domain	197	326	1.3e-60	204.0	Piezo-type mechanosensitive ion channel homolog domain
`XP_057782444.1`	Pfam	`PF23188`	THU_Piezo1	Domain	1341	1443	1e-15	58.6	Piezo1-like, transmembrane helical unit
`XP_057782444.1`	Pfam	`PF24874`	Piezo_THU9_anchor	Domain	1651	1889	4.2e-68	230.0	Piezo, THU9 and anchor domain
`XP_057782444.1`	Pfam	`PF12166`	Piezo_cap	Domain	1917	2194	2.1e-76	258.1	Piezo non-specific cation channel, cap domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926459.1
TTTTTTCGATAAACTGAATTTAGTGCCTTCTCATTTTTCTTGAACGGCATTGATATTTAATTCTAGATAGAAAACTCTTGATGTTTGTGTAAATACCTATTTCTTGATCAGATAGGTTTGGTTTGCTTTCCTCCTTTTAGTTCTTTTTGACGATGATGGCAATGCAAAAATCGTAGCTTTTCCGGAACATGGAGAAAATATGAGATTGCATGGTGAAAAGGGTAATTATGGGAAGTATTCTGGGTGGGTTTGTATTGCCA...

XM_057926460.1
GTTAGGTTAGCTTCTTGCGTCTCGCTGCCTGCTGTTCAGTTGGTCTCGGGGATCAGCTATCCTTCTTGGCTATCTTTGCCATTTTTCATTTGCAGCTGTGTTGGTCTTGTTGATTGGTCTCTAACAAGCAACTTTTTAGGTGGTGGAAGCTGCTCTGGTCATATGCTGGTTTCGTCATTAGCCTGCTTTATATTTATCAGCTCCCTGTTGGGTTTCCAAAAATGTTTGAAGTGATTGCTGACTCGATTGGTCTGTACAAA...

CDS

3 records

下载 CDS FASTA

LOC131000514
ATGGTGAAAAGGGTAATTATGGGAAGTATTCTGGGTGGGTTTGTATTGCCATTGCTTCTTTTGTCAGCTGGGTTACTGAATTGGAGCTTGATTTCTTTCATTAATTTGACGACTTCTCTTGTTCTGCGGTTTACTGCCCCAAAAAGAGGGTTTCGATTCAAAGGAAGGGTTCTATCCTTGTGGTTTGTTTTCATATTCGCGGCACTGGTTATATTCTTACAAGTGATTTTTCTTACTCTATGTGCTACTCGGGATTCGGA...

LOC131000514
ATGTTTGAAGTGATTGCTGACTCGATTGGTCTGTACAAAATTTCTCTGGATTCCGACTGGCAACAAATATGTTCTGGTACTTCCCTGATGGTCTTCTATTATATGCTTTCTTGTGTGAAGCATGATTTAGAAGACATGGAATTCATTATGTCCATGGGAGAAGGCAGCTTGACAGAACAACTTCTTCCCTCAAGAAATTCTTTTTTTGTTCGTCAGCTAAGGTCTGGTGTAAGGCATACCAATATATTATTAAGGGGACC...

Protein

3 records

下载 Protein FASTA

XP_057782442.1
MVKRVIMGSILGGFVLPLLLLSAGLLNWSLISFINLTTSLVLRFTAPKRGFRFKGRVLSLWFVFIFAALVIFLQVIFLTLCATRDSEWSIADAWWIKLLGLMKFHSWRSPKVIYFLVVESLVGFVALTEINRNKFGFIEYGGSFCGFQDSFWGYISSVFNQIGYHVRLASCVSLPAVQLVSGISYPSWLSLPFFICSCVGLVDWSLTSNFLGLFRWWKLLWSYAGFVISLLYIYQLPVGFPKMFEVIADSIGLYKISLDS...

XP_057782443.1
MFEVIADSIGLYKISLDSDWQQICSGTSLMVFYYMLSCVKHDLEDMEFIMSMGEGSLTEQLLPSRNSFFVRQLRSGVRHTNILLRGPIFRIFSINWFTYGYPISLFALSYWSFHFASICAFGLLAYVGYVMYAFPSVFHLHHLNGLLLVFILLWAVSTYIFNVAFAYVNWKLGKDMEIWEMVGLWHYPIPGFFLLAQFCLGVLVALGNLVSNSVFLCLSNEEGRFSTESETEEVKEGAKVLVVATIAWVMRKSSRPIMLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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