当前解析结果
SmilChr08G000935| 统一新 Gene ID | SmilChr08G000935 |
|---|---|
| 名称 | SmilChr08G000935 |
| 描述 | nodulin homeobox-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 6937789 - 6947025 / + |
| NCBI Gene ID | LOC131000523 |
|---|---|
| GeneID | 131000523 |
| locus_tag | - |
| NCBI Name | LOC131000523 |
| 原始查询 | LOC131000523 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nodulin homeobox-like |
| 产物 | nodulin homeobox-like |
| Arabidopsis | AT4G03090 (AT4G03090)sequence-specific DNA binding transcription factor ATNDX [Source:NCBI gene (formerly Entrezgene);Acc:828094] identity=39.6; qcov=0.932; evalue=0; confidence=medium |
| Rice | Os05g0188600- identity=41.1; qcov=0.267; evalue=1.55e-49; confidence=weak |
| GO | GO:0003697 (single-stranded DNA binding); GO:0009908 (flower development) |
| KEGG | - |
| Pfam | PF24426 (HTH_NDX); PF24679 (Nodulin_C); PF25246 (Nodulin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782461.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782461.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782461.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782461.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782461.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:6939161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr8:6940372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:6940399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B52 |
Chr8:6941159 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B25,B72,C29,D11 |
Chr8:6941497 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr8:6944068 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B140,B6,B67,C65,C83 |
Chr8:6945280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,C18,C82 |
Chr8:6945451 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr8:6946306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,B63,C16,D2 |
Chr8:6946599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:6946722 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B134,C51,C79 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782461.1PF25246
Nodulin_N 25-427 aa
PF25246
Nodulin_N 428-507 aa
PF24426
HTH_NDX 680-743 aa
PF24679
Nodulin_C 813-898 aa
PF24679
Nodulin_C 900-986 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782461.1 |
Pfam | PF25246 |
Nodulin_N | Domain | 25 | 427 | 1.1e-203 | 678.1 | Nodulin N-terminal domain |
XP_057782461.1 |
Pfam | PF25246 |
Nodulin_N | Domain | 428 | 507 | 1.1e-203 | 678.1 | Nodulin N-terminal domain |
XP_057782461.1 |
Pfam | PF24426 |
HTH_NDX | Domain | 680 | 743 | 9.8e-35 | 119.0 | NDX Homeobox-like domain |
XP_057782461.1 |
Pfam | PF24679 |
Nodulin_C | Domain | 813 | 898 | 1.2e-76 | 253.4 | Nodulin C-terminal domain |
XP_057782461.1 |
Pfam | PF24679 |
Nodulin_C | Domain | 900 | 986 | 1.2e-76 | 253.4 | Nodulin C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。