当前解析结果
SmilChr08G001030| 统一新 Gene ID | SmilChr08G001030 |
|---|---|
| 名称 | SmilChr08G001030 |
| 描述 | 110 kDa U5 small nuclear ribonucleoprotein component CLO |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7823200 - 7828312 / - |
| NCBI Gene ID | LOC131000524 |
|---|---|
| GeneID | 131000524 |
| locus_tag | - |
| NCBI Name | LOC131000524 |
| 原始查询 | LOC131000524 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 110 kDa U5 small nuclear ribonucleoprotein component CLO |
| 产物 | 110 kDa U5 small nuclear ribonucleoprotein component CLO |
| Arabidopsis | AT1G06220 (MEE5)Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:837131] identity=84.9; qcov=1; evalue=0; confidence=high |
| Rice | Os06g0608300- identity=78.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0000398 (mRNA splicing, via spliceosome); GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:0030623 (U5 snRNA binding); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071007 (U2-type catalytic step 2 spliceosome) |
| KEGG | smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00009 (GTP_EFTU); PF00679 (EFG_C); PF01926 (MMR_HSR1); PF03144 (GTP_EFTU_D2); PF03764 (EFG_IV); PF16004 (EFTUD2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000524 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057782462.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057782462.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057782462.1 |
| 4 | Nucleoplasm | 核质 | 0.40000 | XP_057782462.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782462.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7823685 |
GT |
G |
1bp_deletion | frameshift_variant | 50 | A2,A4,A5,A9,B102,B11,B114,B121,B123,B126,B128,B132,B133,B135,B19,B22,B27,B29,B30,B31,B33,B36,B50,B60,B61,B66,B70,B76,B8,B87,C1,C33,C34,C38,C46,C54,C56,C57,C60,C63,C64,C66,C71,C74,C78,C80,C83,C9,D3,D5 |
Chr8:7823716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B26,D11 |
Chr8:7823751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D2 |
Chr8:7823958 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr8:7825007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,A3,B104,C58 |
Chr8:7825280 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,D4 |
Chr8:7825970 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr8:7827010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B104,B22 |
Chr8:7827286 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B64 |
Chr8:7827607 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782462.1PF16004
EFTUD2 3-119 aa
PF00009
GTP_EFTU 139-333 aa
PF01926
MMR_HSR1 141-271 aa
PF03144
GTP_EFTU_D2 507-581 aa
PF03764
EFG_IV 722-838 aa
PF00679
EFG_C 841-929 aa
XP_057782463.1PF16004
EFTUD2 3-119 aa
PF00009
GTP_EFTU 139-333 aa
PF01926
MMR_HSR1 141-271 aa
PF03144
GTP_EFTU_D2 507-581 aa
PF03764
EFG_IV 722-838 aa
PF00679
EFG_C 841-929 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782462.1 |
Pfam | PF16004 |
EFTUD2 | Family | 3 | 119 | 3.9e-35 | 121.8 | 116 kDa U5 small nuclear ribonucleoprotein component N-terminus |
XP_057782462.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 139 | 333 | 3.2e-43 | 148.2 | Elongation factor Tu GTP binding domain |
XP_057782462.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 141 | 271 | 2.3e-05 | 25.2 | 50S ribosome-binding GTPase |
XP_057782462.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 507 | 581 | 1.3e-08 | 35.9 | Elongation factor Tu domain 2 |
XP_057782462.1 |
Pfam | PF03764 |
EFG_IV | Domain | 722 | 838 | 3.5e-19 | 69.5 | Elongation factor G, domain IV |
XP_057782462.1 |
Pfam | PF00679 |
EFG_C | Domain | 841 | 929 | 2.3e-22 | 79.5 | Elongation factor G C-terminus |
XP_057782463.1 |
Pfam | PF16004 |
EFTUD2 | Family | 3 | 119 | 3.8e-35 | 121.9 | 116 kDa U5 small nuclear ribonucleoprotein component N-terminus |
XP_057782463.1 |
Pfam | PF00009 |
GTP_EFTU | Domain | 139 | 333 | 3.1e-43 | 148.3 | Elongation factor Tu GTP binding domain |
XP_057782463.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 141 | 271 | 2.2e-05 | 25.2 | 50S ribosome-binding GTPase |
XP_057782463.1 |
Pfam | PF03144 |
GTP_EFTU_D2 | Domain | 507 | 581 | 1.2e-08 | 35.9 | Elongation factor Tu domain 2 |
XP_057782463.1 |
Pfam | PF03764 |
EFG_IV | Domain | 722 | 838 | 3.4e-19 | 69.5 | Elongation factor G, domain IV |
XP_057782463.1 |
Pfam | PF00679 |
EFG_C | Domain | 841 | 929 | 2.2e-22 | 79.6 | Elongation factor G C-terminus |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。