Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000987`

染色体: Chr08 坐标: 7394625-7399541 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000987`
名称	SmilChr08G000987
描述	110 kDa U5 small nuclear ribonucleoprotein component CLO
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7394625 - 7399541 / `-`

ID 对照

NCBI Gene ID	`LOC131000525`
GeneID	`131000525`
locus_tag	`-`
NCBI Name	`LOC131000525`
原始查询	`LOC131000525`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	110 kDa U5 small nuclear ribonucleoprotein component CLO
产物	110 kDa U5 small nuclear ribonucleoprotein component CLO
Arabidopsis	`AT1G06220` (MEE5) Ribosomal protein S5/Elongation factor G/III/V family protein [Source:NCBI gene (formerly Entrezgene);Acc:837131] identity=84.9; qcov=1; evalue=0; confidence=high
Rice	`Os06g0608300` - identity=78.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0003746 (translation elongation factor activity); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005829 (cytosol); GO:0030623 (U5 snRNA binding); GO:0046540 (U4/U6 x U5 tri-snRNP complex); GO:0071007 (U2-type catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00009 (GTP_EFTU); PF00679 (EFG_C); PF01926 (MMR_HSR1); PF03144 (GTP_EFTU_D2); PF03764 (EFG_IV); PF16004 (EFTUD2)
InterPro	-
eggNOG	-
NR	GeneID:131000525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057782465.1`
2	Cytoplasm	细胞质	0.80000	`XP_057782465.1`
3	Cytosol	细胞质基质	0.60000	`XP_057782465.1`
4	Nucleoplasm	核质	0.40000	`XP_057782465.1`
5	Chromosome	染色体	0.00000	`XP_057782465.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7395314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B109,B122,B4,C8
`Chr8:7397798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A20,B136,B21,B35,C27
`Chr8:7397906`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B29
`Chr8:7397906`	`CT`	`C`	1bp_deletion	CDS_variant	1	B29
`Chr8:7398588`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr8:7398842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B65,B93,C68
`Chr8:7398958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A7,B117,C48

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782465.1

992 aa

496

992

EFTUD2

GTP_EFTU

MMR_HSR1

GTP_EFTU_D2

EFG_IV

EFG_C

PF16004 EFTUD2 3-119 aa PF00009 GTP_EFTU 139-333 aa PF01926 MMR_HSR1 141-271 aa PF03144 GTP_EFTU_D2 507-581 aa PF03764 EFG_IV 722-838 aa PF00679 EFG_C 841-929 aa

XP_057782466.1

988 aa

494

988

EFTUD2

GTP_EFTU

MMR_HSR1

GTP_EFTU_D2

EFG_IV

EFG_C

PF16004 EFTUD2 3-119 aa PF00009 GTP_EFTU 139-333 aa PF01926 MMR_HSR1 141-271 aa PF03144 GTP_EFTU_D2 507-581 aa PF03764 EFG_IV 722-838 aa PF00679 EFG_C 841-929 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782465.1`	Pfam	`PF16004`	EFTUD2	Family	3	119	3.9e-35	121.8	116 kDa U5 small nuclear ribonucleoprotein component N-terminus
`XP_057782465.1`	Pfam	`PF00009`	GTP_EFTU	Domain	139	333	3.2e-43	148.2	Elongation factor Tu GTP binding domain
`XP_057782465.1`	Pfam	`PF01926`	MMR_HSR1	Family	141	271	2.3e-05	25.2	50S ribosome-binding GTPase
`XP_057782465.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	507	581	1.3e-08	35.9	Elongation factor Tu domain 2
`XP_057782465.1`	Pfam	`PF03764`	EFG_IV	Domain	722	838	3.5e-19	69.5	Elongation factor G, domain IV
`XP_057782465.1`	Pfam	`PF00679`	EFG_C	Domain	841	929	2.3e-22	79.5	Elongation factor G C-terminus
`XP_057782466.1`	Pfam	`PF16004`	EFTUD2	Family	3	119	3.8e-35	121.9	116 kDa U5 small nuclear ribonucleoprotein component N-terminus
`XP_057782466.1`	Pfam	`PF00009`	GTP_EFTU	Domain	139	333	3.1e-43	148.3	Elongation factor Tu GTP binding domain
`XP_057782466.1`	Pfam	`PF01926`	MMR_HSR1	Family	141	271	2.2e-05	25.2	50S ribosome-binding GTPase
`XP_057782466.1`	Pfam	`PF03144`	GTP_EFTU_D2	Domain	507	581	1.2e-08	35.9	Elongation factor Tu domain 2
`XP_057782466.1`	Pfam	`PF03764`	EFG_IV	Domain	722	838	3.4e-19	69.5	Elongation factor G, domain IV
`XP_057782466.1`	Pfam	`PF00679`	EFG_C	Domain	841	929	2.2e-22	79.6	Elongation factor G C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926482.1
ATTTTGCATACAAATGCAAGAAAATCTAAATCGCAATTGTATTGGGCAGTCTTGGAGCAAACCCAGACTAAAACCCCTTCGCCATCAAACCTAGCACCGCCGTGACCCCGCCCCTCAGCACACATACCTCCGCCGCCGAGCAGCAACCGTTCATAGCAATACCTTCCATCCACGCAACAGGCTTATAAGCTATGGATGATAATCTTTACGATGAGTTTGGAAACTATATTGGACCTGAAATCGATTCCGATCGGGAGAGT...

XM_057926483.1
TTTGCATACAAATGCAAGAAAATCTAAATCGCAATTGTATTGGGCAGTCTTGGAGCAAACCCAGACTAAAACCCCTTCGCCATCAAACCTAGCACCGCCGTGACCCCGCCCCTCAGCACACATACCTCCGCCGCCGAGCAGCAACCGTTCATAGCAATACCTTCCATCCACGCAACAGGCTTATAAGCTATGGATGATAATCTTTACGATGAGTTTGGAAACTATATTGGACCTGAAATCGATTCCGATCGGGAGAGTGA...

CDS

2 records

下载 CDS FASTA

LOC131000525
ATGGATGATAATCTTTACGATGAGTTTGGAAACTATATTGGACCTGAAATCGATTCCGATCGGGAGAGTGATAGGGAGGAGGAAGAGGAGGAACTGCCTGACCGGACCGAGGATGAGGAGCCTATGTCTGATGATGAACGTGGCCCTGGAAAACCAAATGGGTGGCTAACAACGACTGAGGATGTTGATATGGATGGCCAAATTGTCCTAGCCGAGGACAAAAAATACTACCCAACTGCTGAGGAGGTCTATGGCGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057782465.1
MDDNLYDEFGNYIGPEIDSDRESDREEEEEELPDRTEDEEPMSDDERGPGKPNGWLTTTEDVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVKNLKFELGVKDSSTYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFVDMLVEQTHHISTFDQNSEKHMRYTDTRIDEQERRISIKAMPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLIVDAGEGVLVNTERAIRHAIQ...

XP_057782466.1
MDDNLYDEFGNYIGPEIDSDRESDREEEEEELPDRTEDEEPMSDDERGPGKPNGWLTTTEDVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVKNLKFELGVKDSSTYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFVDMLVEQTHHISTFDQNSEKHMRYTDTRIDEQERRISIKAMPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLIVDAGEGVLVNTERAIRHAIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器