当前解析结果
SmilChr08G000988| 统一新 Gene ID | SmilChr08G000988 |
|---|---|
| 名称 | SmilChr08G000988 |
| 描述 | BEL1-like homeodomain protein 8 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7422299 - 7427734 / + |
| NCBI Gene ID | LOC131000535 |
|---|---|
| GeneID | 131000535 |
| locus_tag | - |
| NCBI Name | LOC131000535 |
| 原始查询 | LOC131000535 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BEL1-like homeodomain protein 8 |
| 产物 | BEL1-like homeodomain protein 8 |
| Arabidopsis | AT2G27990 (BLH8)BEL1-like homeodomain 8 [Source:NCBI gene (formerly Entrezgene);Acc:817343] identity=41.2; qcov=0.746; evalue=1.36e-88; confidence=medium |
| Rice | Os05g0455200 (RI)- identity=46.8; qcov=0.492; evalue=2.25e-79; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000535 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782487.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057782487.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782487.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782487.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782487.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7423777 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr8:7423778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr8:7423977 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C78,D3 |
Chr8:7424190 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C78,C83 |
Chr8:7424198 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B43 |
Chr8:7424198 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B43 |
Chr8:7424481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,C10,C65 |
Chr8:7424563 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,B37 |
Chr8:7426564 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B8 |
Chr8:7426643 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | B126 |
Chr8:7426643 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | B126 |
Chr8:7426653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782487.1PF07526
POX 314-469 aa
PF05920
Homeobox_KN 541-580 aa
PF00046
Homeodomain 548-580 aa
XP_057782488.1PF07526
POX 314-469 aa
PF05920
Homeobox_KN 541-580 aa
PF00046
Homeodomain 548-580 aa
XP_057782489.1PF07526
POX 180-335 aa
PF05920
Homeobox_KN 407-446 aa
PF00046
Homeodomain 414-446 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782487.1 |
Pfam | PF07526 |
POX | Domain | 314 | 469 | 3.8e-39 | 135.0 | Associated with HOX |
XP_057782487.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 541 | 580 | 1.1e-19 | 70.7 | Homeobox KN domain |
XP_057782487.1 |
Pfam | PF00046 |
Homeodomain | Domain | 548 | 580 | 1.2e-06 | 28.9 | Homeodomain |
XP_057782488.1 |
Pfam | PF07526 |
POX | Domain | 314 | 469 | 3.8e-39 | 135.0 | Associated with HOX |
XP_057782488.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 541 | 580 | 1.1e-19 | 70.7 | Homeobox KN domain |
XP_057782488.1 |
Pfam | PF00046 |
Homeodomain | Domain | 548 | 580 | 1.2e-06 | 28.9 | Homeodomain |
XP_057782489.1 |
Pfam | PF07526 |
POX | Domain | 180 | 335 | 7e-39 | 134.2 | Associated with HOX |
XP_057782489.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 407 | 446 | 9.2e-20 | 70.9 | Homeobox KN domain |
XP_057782489.1 |
Pfam | PF00046 |
Homeodomain | Domain | 414 | 446 | 9.1e-07 | 29.3 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。