当前解析结果
SmilChr08G000972| 统一新 Gene ID | SmilChr08G000972 |
|---|---|
| 名称 | SmilChr08G000972 |
| 描述 | ABC transporter G family member 3 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7231216 - 7236684 / - |
| NCBI Gene ID | LOC131000540 |
|---|---|
| GeneID | 131000540 |
| locus_tag | - |
| NCBI Name | LOC131000540 |
| 原始查询 | LOC131000540 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter G family member 3 |
| 产物 | ABC transporter G family member 3 |
| Arabidopsis | AT2G28070 (ABCG3)ABC-2 type transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:817351] identity=78.5; qcov=0.985; evalue=0; confidence=high |
| Rice | Os03g0859500 (OsABCG7)- identity=63.1; qcov=0.957; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF01061 (ABC2_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000540 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057782496.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057782496.1 |
| 3 | Cell membrane | 细胞膜 | 0.40000 | XP_057782496.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057782496.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782496.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7231390 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B84 |
Chr8:7231390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr8:7231466 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr8:7232161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B88,C48,D1 |
Chr8:7232847 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B8,C27,C57,C84 |
Chr8:7234417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B91,C24,C53 |
Chr8:7234554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C18,D11 |
Chr8:7234584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C24,C53 |
Chr8:7235197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B91,C24,C53 |
Chr8:7235198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,B36 |
Chr8:7235253 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B91,C24,C53 |
Chr8:7235450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782496.1PF00005
ABC_tran 132-276 aa
PF01061
ABC2_membrane 436-646 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782496.1 |
Pfam | PF00005 |
ABC_tran | Domain | 132 | 276 | 8.8e-17 | 62.7 | ABC transporter |
XP_057782496.1 |
Pfam | PF01061 |
ABC2_membrane | Domain | 436 | 646 | 5.3e-29 | 102.0 | ABC-2 type transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。