当前解析结果
SmilChr08G001013| 统一新 Gene ID | SmilChr08G001013 |
|---|---|
| 名称 | SmilChr08G001013 |
| 描述 | uncharacterized SmilChr08G001013 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7603315 - 8010990 / + |
| NCBI Gene ID | LOC131000554 |
|---|---|
| GeneID | 131000554 |
| locus_tag | - |
| NCBI Name | LOC131000554 |
| 原始查询 | LOC131000554 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316]; symbol=GATA11; hit=AT1G08010; species=arabidopsis; confidence=low |
| 产物 | GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316]; symbol=GATA11; hit=AT1G08010; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G08010 (GATA11)GATA transcription factor 11 [Source:NCBI gene (formerly Entrezgene);Acc:837316] identity=43.6; qcov=0.336; evalue=3.61e-33; confidence=low |
| Rice | Os10g0557600 (OsGATA7)- identity=69.3; qcov=0.139; evalue=2.95e-30; confidence=weak |
| GO | GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | PF00320 (GATA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000554 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782522.1 |
| 2 | Chromosome | 染色体 | 0.20000 | XP_057782525.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057782522.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057782522.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057782522.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:8008520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:8008530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:8008857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr8:8008880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C51,C68 |
Chr8:8009738 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B118,B53,D3 |
Chr8:8010207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B125,B68,C11,C69 |
Chr8:8010335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B86 |
Chr8:8010380 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,B62 |
Chr8:8010606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,B62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782522.1PF00320
GATA 217-250 aa
PF00320
GATA 539-573 aa
XP_057782523.1PF00320
GATA 217-250 aa
PF00320
GATA 539-573 aa
XP_057782524.1PF00320
GATA 217-250 aa
PF00320
GATA 539-573 aa
XP_057782525.1PF00320
GATA 145-178 aa
PF00320
GATA 467-501 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782522.1 |
Pfam | PF00320 |
GATA | Domain | 217 | 250 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782522.1 |
Pfam | PF00320 |
GATA | Domain | 539 | 573 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782523.1 |
Pfam | PF00320 |
GATA | Domain | 217 | 250 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782523.1 |
Pfam | PF00320 |
GATA | Domain | 539 | 573 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782524.1 |
Pfam | PF00320 |
GATA | Domain | 217 | 250 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782524.1 |
Pfam | PF00320 |
GATA | Domain | 539 | 573 | 3.4e-31 | 107.2 | GATA zinc finger |
XP_057782525.1 |
Pfam | PF00320 |
GATA | Domain | 145 | 178 | 2.4e-31 | 107.7 | GATA zinc finger |
XP_057782525.1 |
Pfam | PF00320 |
GATA | Domain | 467 | 501 | 2.4e-31 | 107.7 | GATA zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。