Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000941`

染色体: Chr08 坐标: 7003118-7007212 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000941`
名称	SmilChr08G000941
描述	LEC14B protein
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7003118 - 7007212 / `+`

ID 对照

NCBI Gene ID	`LOC131000569`
GeneID	`131000569`
locus_tag	`-`
NCBI Name	`LOC131000569`
原始查询	`LOC131000569`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEC14B protein
产物	LEC14B protein
Arabidopsis	`AT4G03020` (AT4G03020) transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:828111] identity=71.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0407200` (OsWD40-119) - identity=63.5; qcov=0.958; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0080008 (Cul4-RING E3 ubiquitin ligase complex)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131000569

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782548.1`
2	Cytoplasm	细胞质	0.40000	`XP_057782548.1`
3	Chromosome	染色体	0.00000	`XP_057782548.1`
4	Centromere	着丝粒	0.00000	`XP_057782548.1`
5	Chromatin	染色质	0.00000	`XP_057782548.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7004322`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B118,C77,C82
`Chr8:7004360`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:7004452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B51,C18,C46,C62,D11
`Chr8:7004837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,C81
`Chr8:7005339`	`C`	`CG`	1bp_insertion	frameshift_variant	1	C6
`Chr8:7005339`	`C`	`CG`	1bp_insertion	CDS_variant	1	C6
`Chr8:7005342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:7005410`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr8:7005433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,C67
`Chr8:7005477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A9,C4
`Chr8:7005965`	`AC`	`A`	1bp_deletion	frameshift_variant	36	A11,A24,A4,B120,B125,B127,B133,B134,B18,B51,B56,B64,B67,B78,B87,B91,B94,B95,B97,C28,C35,C36,C39,C43,C46,C47,C57,C6,C65,C70,C73,C79,C86,C87,D5,D6
`Chr8:7005967`	`TG`	`T`	1bp_deletion	frameshift_variant	35	A11,A24,A4,B120,B125,B127,B133,B134,B18,B51,B56,B64,B67,B78,B87,B91,B94,B95,B97,C28,C35,C36,C39,C43,C46,C47,C57,C65,C70,C73,C79,C86,C87,D5,D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782548.1

477 aa

238

477

WD40

PF00400 WD40 214-242 aa PF00400 WD40 250-285 aa PF00400 WD40 294-331 aa PF00400 WD40 371-413 aa PF00400 WD40 419-454 aa

XP_057782549.1

477 aa

238

477

WD40

PF00400 WD40 214-242 aa PF00400 WD40 250-285 aa PF00400 WD40 294-331 aa PF00400 WD40 371-413 aa PF00400 WD40 419-454 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782548.1`	Pfam	`PF00400`	WD40	Repeat	214	242	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782548.1`	Pfam	`PF00400`	WD40	Repeat	250	285	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782548.1`	Pfam	`PF00400`	WD40	Repeat	294	331	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782548.1`	Pfam	`PF00400`	WD40	Repeat	371	413	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782548.1`	Pfam	`PF00400`	WD40	Repeat	419	454	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782549.1`	Pfam	`PF00400`	WD40	Repeat	214	242	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782549.1`	Pfam	`PF00400`	WD40	Repeat	250	285	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782549.1`	Pfam	`PF00400`	WD40	Repeat	294	331	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782549.1`	Pfam	`PF00400`	WD40	Repeat	371	413	9.5e-32	108.8	WD domain, G-beta repeat
`XP_057782549.1`	Pfam	`PF00400`	WD40	Repeat	419	454	9.5e-32	108.8	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926565.1
TCTATTTCCCACTCTACTAATGAAGCACAAAGCACCACGCTTTCTATTACACACAAACATTAACCTCCCATGGAAATCTCATACGAATTTCGGTCAATCCCATGACGCTGGCCTCTTATCTCAACCCCAATCCAATTAAATAAGGAAACAATTAAGATTTTTGTTCAACTTTTTCCTTATTACAAGCAAGAAACCACCCCATTCCAAGCAACTGAATCCAATTTCTGTTGACATTGCCGCCGCTATTCCAAGAAAAGGTT...

XM_057926566.1
GCACCACGCTTTCTATTACACACAAACATTAACCTCCCATGGAAATCTCATACGAATTTCGGTCAATCCCATGACGCTGGCCTCTTATCTCAACCCCAATCCAATTAAATAAGGAAACAATTAAGATTTTTGTTCAACTTTTTCCTTATTACAAGCAAGAAACCACCCCATTCCAAGCAACTGAATCCAATTTCTGTTGACATTGCCGCCGCTATTCCAAGAAAAGGTTGTGTGAGCTCAGTGCTTGAAAATCTATTTAT...

CDS

2 records

下载 CDS FASTA

LOC131000569
ATGGGATATGCTTTTAGCAAATTGGAGATGGACTCTGGACTTCTTGATGGTTCGAGTTCCAATGACGAGTTCAGTGGTAGTCCTCGGCTCAATAGACAGTTGCATTCCTTAGACCATGATATTGCTCAGTTAACAAAGCTCCAATCAGGGCCACATGAAAGTTTTAGTCGAATTCTTCAAGGGAAGCGTAAATATCCCGTCTCAACAGTGAAGATGTTGGCGGGTCGAGAAACGAATCTTTCGAAAAGAGGGAGGTTCTC...

Protein

2 records

下载 Protein FASTA

XP_057782548.1
MGYAFSKLEMDSGLLDGSSSNDEFSGSPRLNRQLHSLDHDIAQLTKLQSGPHESFSRILQGKRKYPVSTVKMLAGRETNLSKRGRFSSGDCRHVLSKYLPVNGPWVVDQMSTRAYVSQFSADGSLFMAAFQGSQIRIYDVERGWKVQKNIVARSFRWTITDTSLSPDQKHLVYASMSPIVHIVNVGYAAKESLANVTEIHEGLDFSSPDDGGYSFGIFSLKFSTDGREIVAGSSDEDIYVYDLEAKKLSLRISAHASDVN...

XP_057782549.1
MGYAFSKLEMDSGLLDGSSSNDEFSGSPRLNRQLHSLDHDIAQLTKLQSGPHESFSRILQGKRKYPVSTVKMLAGRETNLSKRGRFSSGDCRHVLSKYLPVNGPWVVDQMSTRAYVSQFSADGSLFMAAFQGSQIRIYDVERGWKVQKNIVARSFRWTITDTSLSPDQKHLVYASMSPIVHIVNVGYAAKESLANVTEIHEGLDFSSPDDGGYSFGIFSLKFSTDGREIVAGSSDEDIYVYDLEAKKLSLRISAHASDVN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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