当前解析结果
SmilChr01G004241| 统一新 Gene ID | SmilChr01G004241 |
|---|---|
| 名称 | SmilChr01G004241 |
| 描述 | DNA polymerase delta small subunit |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60719030 - 60723206 / + |
| NCBI Gene ID | LOC131000587 |
|---|---|
| GeneID | 131000587 |
| locus_tag | - |
| NCBI Name | LOC131000587 |
| 原始查询 | LOC131000587 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA polymerase delta small subunit |
| 产物 | DNA polymerase delta small subunit |
| Arabidopsis | AT2G42120 (POLD2)DNA polymerase delta small subunit [Source:NCBI gene (formerly Entrezgene);Acc:818812] identity=76.3; qcov=0.998; evalue=0; confidence=high |
| Rice | Os03g0128500 (OsPoldelta2)- identity=67.5; qcov=0.98; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0006260 (DNA replication); GO:0006271 (DNA strand elongation involved in DNA replication); GO:0043625 (delta DNA polymerase complex) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)); smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF04042 (DNA_pol_E_B); PF18018 (DNA_pol_D_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000587 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782580.1 |
| 2 | Nucleoplasm | 核质 | 0.80000 | XP_057782580.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057782580.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057782580.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057782580.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60719444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:60720170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B7 |
Chr1:60720193 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr1:60720209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B130,C50,D11 |
Chr1:60721470 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B99,C31 |
Chr1:60721746 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:60721759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B130,C50,D11 |
Chr1:60721762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C79 |
Chr1:60721812 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B13,B24 |
Chr1:60722087 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | C83 |
Chr1:60722087 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | C83 |
Chr1:60722098 |
AT |
A |
1bp_deletion | frameshift_variant | 3 | B124,C61,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782580.1PF18018
DNA_pol_D_N 35-162 aa
PF04042
DNA_pol_E_B 183-393 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782580.1 |
Pfam | PF18018 |
DNA_pol_D_N | Domain | 35 | 162 | 1.6e-40 | 139.0 | DNA polymerase delta subunit OB-fold domain |
XP_057782580.1 |
Pfam | PF04042 |
DNA_pol_E_B | Family | 183 | 393 | 3.7e-51 | 174.3 | DNA polymerase alpha/epsilon subunit B |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。