Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001045`

染色体: Chr08 坐标: 7980077-7983110 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001045`
名称	SmilChr08G001045
描述	cinnamoyl-CoA reductase CAD2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	7980077 - 7983110 / `+`

ID 对照

NCBI Gene ID	`LOC131000593`
GeneID	`131000593`
locus_tag	`-`
NCBI Name	`LOC131000593`
原始查询	`LOC131000593`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cinnamoyl-CoA reductase CAD2-like
产物	cinnamoyl-CoA reductase CAD2-like
Arabidopsis	`AT5G58490` (AT5G58490) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835962] identity=62; qcov=1.01; evalue=1.31e-151; confidence=high
Rice	`Os03g0818200` (OsCCR22) - identity=57.4; qcov=1.01; evalue=9.04e-118; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF05368 (NmrA); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131000593

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057782585.1`
2	Cytoplasm	细胞质	0.80000	`XP_057782585.1`
3	Nucleus	细胞核	0.00000	`XP_057782585.1`
4	Chromosome	染色体	0.00000	`XP_057782585.1`
5	Centromere	着丝粒	0.00000	`XP_057782585.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:7980253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr8:7980512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B61,C20,C28
`Chr8:7980566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B97
`Chr8:7980574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr8:7981007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C62
`Chr8:7981589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:7981652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C78
`Chr8:7982751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B54,B57,C53
`Chr8:7982757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B54,B57,C53
`Chr8:7982803`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B75,C17

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782585.1

321 aa

160

321

NmrA

Polysacc_synt_2

Epimerase

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_10

NAD_binding_4

PF05368 NmrA 8-105 aa PF02719 Polysacc_synt_2 9-129 aa PF08659 KR 9-138 aa PF01370 Epimerase 9-243 aa PF16363 GDP_Man_Dehyd 11-187 aa PF01073 3Beta_HSD 11-237 aa PF13460 NAD_binding_10 13-190 aa PF07993 NAD_binding_4 78-204 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782585.1`	Pfam	`PF05368`	NmrA	Family	8	105	6.2e-13	49.7	NmrA-like family
`XP_057782585.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	129	6.1e-07	29.6	Polysaccharide biosynthesis protein
`XP_057782585.1`	Pfam	`PF08659`	KR	Family	9	138	1.3e-07	32.4	KR domain
`XP_057782585.1`	Pfam	`PF01370`	Epimerase	Family	9	243	8.6e-27	94.8	NAD dependent epimerase/dehydratase family
`XP_057782585.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	11	187	1.5e-14	55.0	GDP-mannose 4,6 dehydratase
`XP_057782585.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	237	2e-21	77.0	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057782585.1`	Pfam	`PF13460`	NAD_binding_10	Domain	13	190	1.4e-14	55.1	NAD(P)H-binding
`XP_057782585.1`	Pfam	`PF07993`	NAD_binding_4	Family	78	204	8.4e-13	48.8	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926602.1
TGAAATCAGCGAGAACAGCAGCCTCACAAAACACATGTGTAAGACGTGAGGAAACAAAACATTCCACACTAGAACAAAAACACGTTCTGCAATCTCCACTCCACATTCCAGCAGTTAACAATGGCGGAAAAGGAAGGAGAAGTGGTCTGCGTCACCGGCGCCAGCGGCTTCATTGGCTCTTGGATCGTCCACCTTCTGCTCCGCCGCGGCTACGCCGTCCGTGCCACCGTCAAAAATCTAGGGGATGAGAGAGAAACGAA...

CDS

1 records

下载 CDS FASTA

LOC131000593
ATGGCGGAAAAGGAAGGAGAAGTGGTCTGCGTCACCGGCGCCAGCGGCTTCATTGGCTCTTGGATCGTCCACCTTCTGCTCCGCCGCGGCTACGCCGTCCGTGCCACCGTCAAAAATCTAGGGGATGAGAGAGAAACGAAGCACTTGGAAGCCATTGAAGGAGCTGATTCCGGCCTTCGCCTCTTCCAGATTGATTTGCTTGATTATGACTCCATTGCCGCCGCAATCAGAGGCGCCACCGGCGTCTTCCACGTCGCTTC...

Protein

1 records

下载 Protein FASTA

XP_057782585.1
MAEKEGEVVCVTGASGFIGSWIVHLLLRRGYAVRATVKNLGDERETKHLEAIEGADSGLRLFQIDLLDYDSIAAAIRGATGVFHVASPCIIDQVDDPQRELLDPAIKGTLNVLTAAKNLDVRRVVVTSSISAMIASATSLADVGEDCWIDEDYCRQNGLWYPLSKALAEKAAWKFAEENGLDIVVVNPGMVVGPVLPPALNSSMQLMVHVLQGCDFSERFFMALVHVKDVALAHVLLYENTSAAGRHLCVESLSRYDEFA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器