当前解析结果
SmilChr08G000964| 统一新 Gene ID | SmilChr08G000964 |
|---|---|
| 名称 | SmilChr08G000964 |
| 描述 | lactoylglutathione lyase |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 7175200 - 7178593 / - |
| NCBI Gene ID | LOC131000606 |
|---|---|
| GeneID | 131000606 |
| locus_tag | - |
| NCBI Name | LOC131000606 |
| 原始查询 | LOC131000606 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lactoylglutathione lyase |
| 产物 | lactoylglutathione lyase |
| Arabidopsis | AT1G08110 (AT1G08110)lactoylglutathione lyase family protein / glyoxalase I family protein [Source:NCBI gene (formerly Entrezgene);Acc:837330] identity=78.5; qcov=0.984; evalue=6.52e-104; confidence=high |
| Rice | Os05g0295800 (GLYI8)- identity=77.5; qcov=0.989; evalue=3.19e-108; confidence=high |
| GO | GO:0004462 (lactoylglutathione lyase activity); GO:0046872 (metal ion binding) |
| KEGG | smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00903 (Glyoxalase); PF13669 (Glyoxalase_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000606 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057782599.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057782599.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057782601.1 |
| 4 | Cytosol | 细胞质基质 | 0.80000 | XP_057782601.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057782599.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:7176849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:7176864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B8,C27,C57,C84 |
Chr8:7178322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B72,C29 |
Chr8:7178354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B86,C22,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782599.1PF00903
Glyoxalase 68-211 aa
PF13669
Glyoxalase_4 69-193 aa
XP_057782601.1PF00903
Glyoxalase 26-169 aa
PF13669
Glyoxalase_4 27-151 aa
XP_057782602.1PF00903
Glyoxalase 26-169 aa
PF13669
Glyoxalase_4 27-151 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782599.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 68 | 211 | 1.7e-27 | 96.9 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057782599.1 |
Pfam | PF13669 |
Glyoxalase_4 | Family | 69 | 193 | 2.3e-06 | 28.6 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057782601.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 26 | 169 | 9.2e-28 | 97.8 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057782601.1 |
Pfam | PF13669 |
Glyoxalase_4 | Family | 27 | 151 | 1.2e-06 | 29.5 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057782602.1 |
Pfam | PF00903 |
Glyoxalase | Domain | 26 | 169 | 9.2e-28 | 97.8 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
XP_057782602.1 |
Pfam | PF13669 |
Glyoxalase_4 | Family | 27 | 151 | 1.2e-06 | 29.5 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。