Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001054

染色体: Chr08 坐标: 8056083-8063784 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001054
名称SmilChr08G001054
描述uncharacterized SmilChr08G001054
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向8056083 - 8063784 / -

ID 对照

NCBI Gene IDLOC131000640
GeneID131000640
locus_tag-
NCBI NameLOC131000640
原始查询LOC131000640

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314]; symbol=AT1G07990; hit=AT1G07990; species=arabidopsis; confidence=high
产物SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314]; symbol=AT1G07990; hit=AT1G07990; species=arabidopsis; confidence=high
ArabidopsisAT1G07990 (AT1G07990)
SIT4 phosphatase-associated family protein [Source:NCBI gene (formerly Entrezgene);Acc:837314]
identity=64.8; qcov=1.01; evalue=0; confidence=high
RiceOs04g0620400
-
identity=64.7; qcov=0.715; evalue=0; confidence=high
GOGO:0019888 (protein phosphatase regulator activity); GO:0019903 (protein phosphatase binding); GO:0043666 (GO:0043666)
KEGG-
PfamPF04499 (SAPS)
InterPro-
eggNOG-
NRGeneID:131000640

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057782629.1
2 Cytoplasm 细胞质 0.60000 XP_057782629.1
3 Golgi apparatus 高尔基体 0.20000 XP_057782629.1
4 Nucleus 细胞核 0.00000 XP_057782629.1
5 Chromosome 染色体 0.00000 XP_057782629.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:8056632 C T EMS_canonical_SNV CDS_variant 2 A10,B85
Chr8:8056658 C T EMS_canonical_SNV CDS_variant 1 A10
Chr8:8060384 G A EMS_canonical_SNV CDS_variant 1 C27
Chr8:8061419 G A EMS_canonical_SNV CDS_variant 1 B136

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782629.1
847 aa
N
1
424
847
SAPS
C
PF04499 SAPS 131-488 aa
XP_057782630.1
846 aa
N
1
423
846
SAPS
C
PF04499 SAPS 131-488 aa
XP_057782631.1
846 aa
N
1
423
846
SAPS
C
PF04499 SAPS 131-487 aa
XP_057782633.1
845 aa
N
1
422
845
SAPS
C
PF04499 SAPS 131-487 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782629.1 Pfam PF04499 SAPS Family 131 488 2.1e-68 232.0 SIT4 phosphatase-associated protein
XP_057782630.1 Pfam PF04499 SAPS Family 131 488 2.1e-68 232.0 SIT4 phosphatase-associated protein
XP_057782631.1 Pfam PF04499 SAPS Family 131 487 1.8e-68 232.2 SIT4 phosphatase-associated protein
XP_057782633.1 Pfam PF04499 SAPS Family 131 487 1.8e-68 232.2 SIT4 phosphatase-associated protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057926646.1
TCGTCGGCTTCTGTTTCCAATTTATACCTTCACCCAATTAATAAATGAAGAAAATAACTGAAAAAATTGAAAGAAAAATAAAAAGTCTGTAGCCGCGCTCGATCTTTGCGGCTCTTTCGATCTTCGAAGGATTAGGGTTTTCAATCTCCACTGCTCATCTTTTGCCCCAATTTCTCCCGCATCCCTCGTTTAAAATTTGAGCTAAATCCTCAAATTTCATGCCTGGATTCGATTTTTGAGCTCACAGATCTACTCAGCTC...
XM_057926648.1
CGTCGGCTTCTGTTTCCAATTTATACCTTCACCCAATTAATAAATGAAGAAAATAACTGAAAAAATTGAAAGAAAAATAAAAAGTCTGTAGCCGCGCTCGATCTTTGCGGCTCTTTCGATCTTCGAAGGATTAGGGTTTTCAATCTCCACTGCTCATCTTTTGCCCCAATTTCTCCCGCATCCCTCGTTTAAAATTTGAGCTAAATCCTCAAATTTCATGCCTGGATTCGATTTTTGAGCTCACAGATCTACTCAGCTCG...

CDS

4 records

下载 CDS FASTA
LOC131000640
ATGTTCTGGAAGCTCACTGCTATGTCCGCCTCATCTCCTGTTGAGGCTGTGCTGGATAAGGAAAATTTTACTTTGGAAGAACTTTTGGATGAAGAAGAGATAATCCAAGAATGCAAAGCATTGAATAGCCGTCTTATTAATTTTTTGAGGGATAGGGCTCAGGTGGAGCAGCTACTGCACTATATTGTTGAGGAGCCTCCTGAAGATGCAGATAGCAAACGAACTTTTAAGTTTCCTTTCATTGCCTGTGAAATTTTTAC...
LOC131000640
ATGTTCTGGAAGCTCACTGCTATGTCCGCCTCATCTCCTGTTGAGGCTGTGCTGGATAAGGAAAATTTTACTTTGGAAGAACTTTTGGATGAAGAAGAGATAATCCAAGAATGCAAAGCATTGAATAGCCGTCTTATTAATTTTTTGAGGGATAGGGCTCAGGTGGAGCAGCTACTGCACTATATTGTTGAGGAGCCTCCTGAAGATGCAGATAGCAAACGAACTTTTAAGTTTCCTTTCATTGCCTGTGAAATTTTTAC...

Protein

4 records

下载 Protein FASTA
XP_057782629.1
MFWKLTAMSASSPVEAVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLHYIVEEPPEDADSKRTFKFPFIACEIFTCEIDVILKTLVDEEELMNLLFSFLEPDRYHSALLAGYFSKVVVCLMLRKTVPLMNYVKAHQDVFRQLVDLIGITSIMEVLVRLVGGDDHLYPNSLDVMQWLADSNLLEMIVDKLNDSNPPEVHANAAETLCAITRNVPSPLATKLSSPGFVGRIFGHALEDSHSKSALVNSLS...
XP_057782630.1
MFWKLTAMSASSPVEAVLDKENFTLEELLDEEEIIQECKALNSRLINFLRDRAQVEQLLHYIVEEPPEDADSKRTFKFPFIACEIFTCEIDVILKTLVDEEELMNLLFSFLEPDRYHSALLAGYFSKVVVCLMLRKTVPLMNYVKAHQDVFRQLVDLIGITSIMEVLVRLVGGDDHLYPNSLDVMQWLADSNLLEMIVDKLNDSNPPEVHANAAETLCAITRNVPSPLATKLSSPGFVGRIFGHALEDSHSKSALVNSLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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